# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1dyoA	160	2.839	b.18.1.7	23771
1neuA	124	8.475	b.1.1.1	19704
2ggrA	76	16.43		
1qj8A	148	19.05	f.4.1.1	43744
1f7dA	136	24.62	b.85.4.1	28353
1hy7A	173	25.11	d.92.1.11	65957
1aipA	405	25.59	b.43.3.1,b.44.1.1,c.37.1.8	25697,25737,32132
1dunA	134	27.18	b.85.4.1	28371
1b5lA	172	28.78	a.26.1.3	16900
2ol1A	147	29.30		
2p22D	79	30.64		
1usuB	170	32.75	d.83.2.1	99886
2jmkA	111	37.48		
1f42A	306	44.79	b.1.1.4,b.1.2.1,b.1.2.1	59636,59637,59638
1m9zA	111	45.24	g.7.1.3	78881
2p54A	267	48.12	a.123.1.1	139497
1wmhA	89	48.38	d.15.2.2	114744
1eerB	227	55.80	b.1.2.1,b.1.2.1	22011,22012
2gufA	594	56.17	f.4.3.3	135736
2fikA	287	60.75	b.1.1.2,d.19.1.1	133524,133525
2p9wA	334	61.96		
2fgsA	179	64.79		
1y1nA	291	68.33		
2ft6A	124	73.15		
1z8gA	372	73.39	b.47.1.2,d.170.1.2	124697,124698
2gujA	155	74.96		
2cxvA	219	78.22	b.47.1.4	131012
1sraA	151	80.48	a.39.1.3	17190
1qr6A	584	87.99	c.2.1.7,c.58.1.3	30293,33941
1x9lA	149	88.75	b.2.10.1	109528
1v87A	114	88.95	g.44.1.1	108422
1cfb	205	89.80		
2rkuA	294	89.86