# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1dyoA	160	4.886	b.18.1.7	23771
1b5lA	172	12.52	a.26.1.3	16900
1neuA	124	14.51	b.1.1.1	19704
1f7dA	136	19.17	b.85.4.1	28353
2ggrA	76	19.25		
1f42A	306	27.71	b.1.1.4,b.1.2.1,b.1.2.1	59636,59637,59638
2ol1A	147	28.28		
1qj8A	148	28.65	f.4.1.1	43744
2p22D	79	29.59		
1dunA	134	33.51	b.85.4.1	28371
1cfb	205	41.90		
2rkuA	294	42.61		
1aipA	405	57.91	b.43.3.1,b.44.1.1,c.37.1.8	25697,25737,32132
1m9zA	111	58.34	g.7.1.3	78881
1usuB	170	64.17	d.83.2.1	99886
1eerB	227	64.61	b.1.2.1,b.1.2.1	22011,22012
2jmkA	111	67.45		
1euwA	152	70.92	b.85.4.1	28349
1au1A	166	72.83	a.26.1.3	16889
1b5l	172	73.94		
1q5hA	147	74.13	b.85.4.1	95893
1wmhA	89	76.67	d.15.2.2	114744
1a1aA	107	79.75	d.93.1.1	40449
2p9wA	334	80.52		
2p54A	267	83.81	a.123.1.1	139497