# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1dyoA	160	8.962	b.18.1.7	23771
1neuA	124	15.45	b.1.1.1	19704
1b5lA	172	22.38	a.26.1.3	16900
1usuB	170	26.92	d.83.2.1	99886
2ggrA	76	28.03		
2rkuA	294	37.10		
1f7dA	136	37.26	b.85.4.1	28353
1wmhA	89	40.50	d.15.2.2	114744
2ol1A	147	40.61		
1qj8A	148	40.86	f.4.1.1	43744
1f42A	306	42.43	b.1.1.4,b.1.2.1,b.1.2.1	59636,59637,59638
2vgpA	284	44.22		
1hy7A	173	47.79	d.92.1.11	65957
2p22D	79	52.12		
1xc3A	302	53.80	c.55.1.10,c.55.1.10	115102,115103
2p9wA	334	55.73		
1dunA	134	60.18	b.85.4.1	28371
1cfb	205	60.44		
1au1A	166	68.62	a.26.1.3	16889
2jmkA	111	83.25		
2o01H	75	87.24		
2bfxA	284	87.43