# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1dyoA	160	8.260	b.18.1.7	23771
1dunA	134	14.69	b.85.4.1	28371
1f7dA	136	17.25	b.85.4.1	28353
1f42A	306	17.72	b.1.1.4,b.1.2.1,b.1.2.1	59636,59637,59638
2ol1A	147	18.08		
2rkuA	294	21.70		
2vgpA	284	25.76		
2p22D	79	27.85		
2cxvA	219	34.01	b.47.1.4	131012
1hy7A	173	34.88	d.92.1.11	65957
1b5lA	172	38.40	a.26.1.3	16900
2jmkA	111	40.71		
2qsvA	220	41.54		
2owbA	335	45.68		
1z8gA	372	46.43	b.47.1.2,d.170.1.2	124697,124698
1neuA	124	47.31	b.1.1.1	19704
1aipA	405	49.62	b.43.3.1,b.44.1.1,c.37.1.8	25697,25737,32132
2p54A	267	49.93	a.123.1.1	139497
2hqbA	296	52.80		
2p9wA	334	62.61		
1p22A	435	62.65	a.158.1.1,b.69.4.1	87715,87716
1edtA	271	64.32	c.1.8.5	28993
1q5hA	147	64.69	b.85.4.1	95893
1p57B	255	69.75	b.47.1.2	94126
2bfxA	284	71.30		
1eerB	227	71.38	b.1.2.1,b.1.2.1	22011,22012
1twfC	318	74.90	d.74.3.1,d.181.1.1	112727,112728
1cfb	205	87.40