# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fgqX 332 4.77e-36 f.4.3.1 133439 2j1nA 346 9.91e-36 1hxxA 340 1.12e-35 f.4.3.1 61385 2porA 301 5.90e-33 f.4.3.1 43759 2por 301 6.51e-32 3prnA 289 6.03e-28 f.4.3.1 43761 3prn 289 4.41e-27 2o4vA 411 3.64e-10 2gufA 594 0.01994 f.4.3.3 135736 1nqeA 594 0.02733 f.4.3.3 86027 1t16A 427 0.04269 f.4.3.4 106242 1a0tP 413 2.217 f.4.3.2 43794 2odjA 428 3.229 1fepA 724 3.376 f.4.3.3 43808 1l3sA 580 3.602 c.55.3.5,e.8.1.1 84521,84522 2mprA 421 3.742 f.4.3.2 43788 2mev1 277 4.295 2v24A 208 4.389 2v5iA 559 6.221 1x9mA 698 6.441 c.55.3.5,e.8.1.1 114999,115000 2a2cA 478 6.587 2hdiA 639 6.785 2hhvA 580 7.926 c.55.3.5,e.8.1.1 136514,136515 1u4bA 580 8.492 c.55.3.5,e.8.1.1 107664,107665 1tyv 542 9.538 1an8 208 11.36 1xkwA 665 11.67 2e58A 308 12.99 1qjpA 171 14.04 f.4.1.1 43742 1ztxE 108 14.16 b.1.18.4 125658 1p4tA 155 19.80 f.4.1.1 87779 1epwA 1290 23.78 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1r62A 160 23.97 d.122.1.3 104816 2kfnA 605 24.16 c.55.3.5,e.8.1.1 33682,42975 2qv3A 457 26.88 1li5A 461 29.72 a.27.1.1,c.26.1.1 73912,73913 2pgd 482 30.99 2ip1A 432 34.45 1lmlA 478 34.55 d.92.1.3 40295 1yk3A 210 36.23 d.108.1.1 123493 2ppvA 332 36.90 1gbsA 185 37.14 d.2.1.5 36986 2f7tA 227 38.03 2bjqA 345 40.20 b.169.1.1,b.169.1.1 128626,128627 1hzfA 367 41.04 a.102.4.4 76731 1owcA 427 42.45 a.103.1.1 104039 1xkgA 312 45.64 d.3.1.1 122081 1r6xA 395 46.66 b.122.1.3,c.26.1.5 97167,97168 1wraA 308 46.78 d.157.1.8 121190 1xdyA 298 48.25 d.176.1.1 115186 1q15A 503 49.54 c.26.2.1,d.153.1.1 95538,95539 1vrbA 342 51.21 b.82.2.11 120450 1w99A 558 52.83 2uuqA 414 52.99 1yslA 402 52.99 2btoA 473 54.17 1oc7A 364 56.08 c.6.1.1 86794 1et9A 204 56.20 b.40.2.2,d.15.6.1 25204,37793 1tyvA 554 56.21 b.80.1.6 28038 1rocA 155 56.82 b.1.22.1 97673 1sesA 421 58.56 a.2.7.1,d.104.1.1 15710,40710 2o2zA 323 62.00 2vbuA 136 62.49 2ftwA 521 62.90 b.92.1.3,c.1.9.6 134083,134084 3bb0A 609 63.63 1wx1A 335 64.28 1ej6D 418 65.63 i.7.1.1 45970 2cjqA 720 65.68 2hq2A 354 66.62 e.62.1.1 136656 1dbiA 280 67.43 c.41.1.1 32543 2jepA 395 67.95 2pe3A 354 69.68 1bu8A 452 69.73 b.12.1.2,c.69.1.19 23647,34795 1n1tA 641 69.88 b.29.1.15,b.68.1.1 79821,79822 3bkbA 377 69.90 1kmoA 774 71.72 f.4.3.3 72753 1zo4A 473 72.89 1ar61 302 72.97 1wqaA 455 73.15 1vk3A 615 74.47 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 2q1fA 1022 75.88 2olsA 794 77.34 1yreA 197 77.48 d.108.1.1 123919 3cblA 377 79.15 1csh 435 80.00 2gsoA 393 81.39 2oqeA 660 81.55 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1r1a1 287 83.63 2qpxA 376 83.96 1gsmA 210 84.13 b.1.1.4,b.1.1.4 65535,65536 1v0eA 666 84.33 b.68.1.2,b.108.1.3 113466,113467 1fnyA 237 84.36 b.29.1.1 59920 1w7cA 747 84.59 1qwnA 1045 85.49 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 2h7jA 220 87.77 d.3.1.1 136216 2ivfC 214 87.95 2aq4A 434 88.00 1tyjA 170 88.83 b.2.2.2 119390