# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	1.06e-05	d.98.1.1	67267
2g2uB	165	1.26e-05	d.98.1.1	134541
2fyxA	143	1.353	d.58.57.1	134411
2o8xA	70	3.584		
2fbhA	146	5.090	a.4.5.28	133245
2f5gA	133	8.333	d.58.57.1	132991
1tygB	87	8.700	d.15.3.2	107455
2a6mA	155	8.850	d.58.57.1	126287
1r69	69	11.42		
2h36X	112	12.21		
2h27A	73	12.91	a.4.13.2	135993
1adrA	76	15.55	a.35.1.2	17042
1vmbA	140	16.46	d.58.14.1	113672
1mt6A	280	17.37	b.76.2.1,b.85.7.1	79446,79447
2hr3A	147	18.05	a.4.5.28	136678
2q88A	257	20.62		
1mqoA	227	22.36	d.157.1.1	103846
2nrrA	159	23.27		
1vkiA	181	23.60	d.116.1.1	108664
1utxA	66	23.69	a.35.1.3	108034
2ef8A	84	24.53		
3b40A	417	25.31		
2iwxA	214	26.08	d.122.1.1	137758
2bnmA	198	26.63	a.35.1.3,b.82.1.10	128835,128836
2b5aA	77	29.03	a.35.1.3	127882
2fa1A	160	29.32	d.190.1.2	133182
2jspA	87	30.66		
2gauA	232	30.98	a.4.5.4,b.82.3.2	134894,134895
2ppxA	99	31.93		
2vjvA	159	33.84		
1vfrA	218	33.87	d.90.1.1	40247
1r69A	69	36.50	a.35.1.2	17028
3bemA	218	36.90		
1lmb3	92	38.11		
1y7yA	74	38.85	a.35.1.3	122729
2govA	195	38.98	d.60.1.4	135447
1lliA	92	39.83	a.35.1.2	17025
3boqA	160	42.16		
1lj9A	144	43.48	a.4.5.28	78035
1or7A	194	47.51	a.4.13.2,a.177.1.1	87332,87333
2cro	71	47.55		
2cxyA	125	48.31		
1vjfA	180	48.85	d.116.1.1	100809
1lnwA	147	50.02	a.4.5.28	78104
2e01A	457	52.21		
3broA	141	53.93		
2i5gA	325	53.96		
1zud2	66	54.47		
2bv6A	142	54.54		
1fs1B	141	54.80	a.157.1.1,d.42.1.1	19252,38664
2pexA	153	54.98		
2hpaA	342	55.73	c.60.1.2	33985
1jkoC	52	56.32	a.4.1.2	66809
1yqgA	263	56.98		
2breA	219	57.34	d.122.1.1	128994
2rdpA	150	57.77		
1z2nX	324	58.07		
3b7hA	78	58.17		
3bs3A	76	58.86		
3bddA	142	59.12		
2iorA	235	61.65		
2frhA	127	61.82	a.4.5.28	133988
1dxkA	227	62.37	d.157.1.1	42036
2glxA	332	62.91		
2f1sA	186	63.56		
1vhtA	218	63.64	c.37.1.1	100700
2oggA	152	66.32		
1nox	205	69.46		
1nstA	325	70.25	c.37.1.5	31951
1jjtA	228	71.02	d.157.1.1	63139
2d5vA	164	71.81		
1fqvD	149	75.19	a.157.1.1,d.42.1.1	19263,38667
1vj7A	393	75.55	a.211.1.1,d.218.1.8	100801,100802
1rp3A	239	77.77	a.4.13.1,a.4.13.2,a.177.1.1	97678,97679,97680
1h67A	108	79.17	a.40.1.1	65643
1hcrA	52	79.20	a.4.1.2	16020
1s1hM	132	80.36	i.1.1.1	105165
3ceaA	346	85.84		
1th8A	145	87.09	d.122.1.3	106908
1sedA	117	88.10	a.219.1.1	105449