# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	3.52e-06	d.98.1.1	67267
2g2uB	165	3.54e-06	d.98.1.1	134541
2fyxA	143	0.7365	d.58.57.1	134411
2a6mA	155	3.096	d.58.57.1	126287
2o8xA	70	5.086		
2f5gA	133	5.799	d.58.57.1	132991
1vmbA	140	6.878	d.58.14.1	113672
2h36X	112	7.230		
1tygB	87	9.213	d.15.3.2	107455
2fbhA	146	10.38	a.4.5.28	133245
2vjvA	159	13.42		
2h27A	73	18.67	a.4.13.2	135993
2q88A	257	20.16		
1r69	69	20.83		
2nrrA	159	20.90		
1mt6A	280	24.94	b.76.2.1,b.85.7.1	79446,79447
1vfrA	218	25.29	d.90.1.1	40247
2govA	195	28.25	d.60.1.4	135447
1mqoA	227	28.92	d.157.1.1	103846
1vkiA	181	30.81	d.116.1.1	108664
2hr3A	147	31.17	a.4.5.28	136678
3bemA	218	31.60		
2jspA	87	32.37		
1adrA	76	32.55	a.35.1.2	17042
2ef8A	84	33.41		
3c1aA	315	38.83		
2o4uX	334	40.25		
2ppxA	99	42.43		
1utxA	66	43.33	a.35.1.3	108034
1vjfA	180	43.64	d.116.1.1	100809
2bnmA	198	44.63	a.35.1.3,b.82.1.10	128835,128836
2iorA	235	45.41		
1z2nX	324	46.56		
1nox	205	48.36		
2glxA	332	48.37		
2iwxA	214	51.32	d.122.1.1	137758
2b5aA	77	52.17	a.35.1.3	127882
1jkoC	52	52.95	a.4.1.2	66809
2ejhA	255	52.99		
1fs1B	141	53.35	a.157.1.1,d.42.1.1	19252,38664
3boqA	160	54.09		
3b40A	417	58.86		
1nstA	325	58.99	c.37.1.5	31951
1yqgA	263	59.16		
1dxkA	227	59.48	d.157.1.1	42036
2e01A	457	60.46		
2ismA	352	60.90		
2gauA	232	62.21	a.4.5.4,b.82.3.2	134894,134895
2fa1A	160	63.12	d.190.1.2	133182
1or7A	194	65.01	a.4.13.2,a.177.1.1	87332,87333
2bv6A	142	66.73		
2oggA	152	67.87		
1zud2	66	68.24		
2d5vA	164	68.67		
1vhtA	218	69.18	c.37.1.1	100700
1ufmA	84	70.79	a.4.5.47	107816
1r69A	69	70.81	a.35.1.2	17028
1s1hM	132	71.64	i.1.1.1	105165
1xipA	388	72.55	b.69.14.1	115360
1th8A	145	78.14	d.122.1.3	106908
1vj7A	393	78.61	a.211.1.1,d.218.1.8	100801,100802
2ho3A	325	78.99		
1fqvD	149	79.27	a.157.1.1,d.42.1.1	19263,38667
2iskA	230	84.74		
2graA	277	85.02		
1lnwA	147	85.81	a.4.5.28	78104
1lmb3	92	86.44		
2f1sA	186	88.01		
1lliA	92	88.68	a.35.1.2	17025
2hpaA	342	88.98	c.60.1.2	33985