# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	7.27e-13	d.98.1.1	134541
1jtgB	165	1.05e-12	d.98.1.1	67267
1u6eA	335	3.059	c.95.1.2,c.95.1.2	119568,119569
1dliA	402	10.84	a.100.1.4,c.2.1.6,c.26.3.1	18809,30213,31622
2o8xA	70	12.71		
2h27A	73	16.69	a.4.13.2	135993
2oxgB	124	17.30		
1wdcB	156	18.68	a.39.1.5	17302
2grjA	192	18.92		
1z82A	335	19.31		
1gq6A	313	19.63	c.42.1.1	70341
1vd6A	224	20.20	c.1.18.3	119991
2hmaA	376	20.73		
2a0mA	316	20.87	c.42.1.1	125960
2ja9A	175	20.88		
1rw1A	114	26.26	c.47.1.12	111945
2fbhA	146	29.88	a.4.5.28	133245
2f6rA	281	31.77		
2qdrA	303	32.07		
2ho3A	325	32.19		
1j3wA	163	33.08	d.110.7.1	90833
1a8yA	367	33.81	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
2pttB	112	36.33		
1tiwA	602	37.30	a.176.1.1,c.1.23.2	112430,112431
1t6sA	162	37.52	a.4.5.60,a.4.5.60	112271,112272
1zzkA	82	39.49	d.51.1.1	125909
2gb4A	252	44.38		
2ef5A	290	45.71		
1ywqA	200	46.00	d.90.1.1	124162
3c7jA	237	46.78		
1f5vA	240	47.90	d.90.1.1	40255
2cx5A	158	48.74		
1tu3F	79	50.57	h.1.27.2	112644
2q6mA	212	51.35		
1vhtA	218	52.21	c.37.1.1	100700
2uyoA	310	52.40		
2qhkA	174	52.95		
1hnjA	317	55.47	c.95.1.2,c.95.1.2	35969,35970
1noxA	205	58.20	d.90.1.1	40242
2z0xA	158	58.54		
2b67A	204	58.57	d.90.1.1	127970
3bemA	218	59.52		
2freA	200	59.68	d.90.1.1	133985
2veoA	441	61.41		
2r7dA	469	63.71		
1ku3A	73	63.82	a.4.13.2	73000
2iskA	230	66.40		
2pliA	91	68.04		
2dxaA	166	68.06		
2p2rA	76	68.97		
2h36X	112	75.19		
1dbxA	158	75.70	d.116.1.1	40928
1c1dA	355	77.53	c.2.1.7,c.58.1.1	30270,33918
1o1zA	234	78.22	c.1.18.3	86555
1tltA	319	79.51	c.2.1.3,d.81.1.5	107135,107136
1nox	205	80.80		
1luzA	88	81.71	b.40.4.5	74271
2hy5A	130	82.67	c.114.1.1	136865
2cx1A	187	83.52	b.122.1.1,d.17.6.4	130967,130968
2guzA	71	83.92		
2bt2A	161	85.13		
1a8y	367	85.63		
2dc4A	165	86.97		
1z6fA	363	87.50	b.105.1.1,e.3.1.1	124520,124521