# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yewA	382	12.89		
1ycsB	239	16.80	d.211.1.1,b.34.2.1	19155,24553
1spvA	184	17.09	c.50.1.2	98957
2igqA	285	21.45		
1vhuA	211	22.11	c.50.1.2	100703
1n0qA	93	24.06	k.37.1.1	79754
2cthA	107	24.88	a.138.1.1	19652
2rfmA	192	30.33		
2i6vA	87	32.30		
1lshB	319	35.23	f.7.1.1	74245
1yxhA	126	36.78		
1kx5C	128	43.02	a.22.1.1	77595
1pdkB	157	43.71	b.2.3.2	22427
1n71A	180	45.85	d.108.1.1	85370
1cd31	152	46.64		
1xmkA	79	52.82	a.4.5.19	122165
1mk4A	157	55.25	d.108.1.1	84979
2q2gA	180	56.44		
1z1dA	103	57.36	a.4.5.16	124351
1kpgA	287	57.63	c.66.1.18	68735
2jabA	136	58.00		
1oy3D	282	58.37	d.211.1.1	87554
1yocA	147	63.27	d.38.1.5	123778
2zcwA	202	67.53		
1mroA	548	68.97	a.89.1.1,d.58.31.2	18525,39443
1tzyA	129	69.18	a.22.1.1	107530
1b43A	340	69.31	a.60.7.1,c.120.1.2	18092,33362
2az4A	429	69.58	d.157.1.10	127597
1kmvA	186	69.59	c.71.1.1	72757
1pdgA	109	70.05	g.17.1.1	44748
1aoiC	116	70.73	a.22.1.1	16440
1mkkA	96	71.68	g.17.1.1	79240
1hbnA	549	73.29	a.89.1.1,d.58.31.2	60898,60899
2ixmA	303	74.59	a.268.1.1	137776
1aolA	228	75.57	b.20.1.1	23840
1f76A	336	75.69	c.1.4.1	76160
1a76A	326	76.86	a.60.7.1,c.120.1.2	18091,33361
1qs1A	462	77.22	d.166.1.1,d.166.1.1	42260,42261
1zgwA	139	77.74		
1zl8A	53	78.99	a.194.1.1	125238
1cc8A	73	79.48	d.58.17.1	39343
1u8bA	133	82.70		
1te5A	257	88.46	d.153.1.1	106795
1tx9A	151	88.75	a.84.1.1	119383