# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yewA	382	15.34		
1ycsB	239	15.74	d.211.1.1,b.34.2.1	19155,24553
1spvA	184	18.33	c.50.1.2	98957
1vhuA	211	19.64	c.50.1.2	100703
2igqA	285	20.95		
2cthA	107	22.63	a.138.1.1	19652
1n0qA	93	25.91	k.37.1.1	79754
2i6vA	87	29.16		
1lshB	319	34.57	f.7.1.1	74245
2rfmA	192	38.37		
1pdkB	157	39.17	b.2.3.2	22427
1n71A	180	43.41	d.108.1.1	85370
1yxhA	126	45.09		
1f76A	336	46.93	c.1.4.1	76160
1cd31	152	51.65		
1mroA	548	56.57	a.89.1.1,d.58.31.2	18525,39443
1kx5C	128	57.77	a.22.1.1	77595
1oy3D	282	57.84	d.211.1.1	87554
2jabA	136	58.50		
1hbnA	549	61.23	a.89.1.1,d.58.31.2	60898,60899
1te5A	257	61.34	d.153.1.1	106795
1xmkA	79	61.94	a.4.5.19	122165
1pdgA	109	63.25	g.17.1.1	44748
1u8bA	133	65.31		
1cc8A	73	65.52	d.58.17.1	39343
1b43A	340	65.56	a.60.7.1,c.120.1.2	18092,33362
1zgwA	139	65.87		
1z1dA	103	66.09	a.4.5.16	124351
1mkkA	96	66.10	g.17.1.1	79240
1yocA	147	66.17	d.38.1.5	123778
2az4A	429	66.24	d.157.1.10	127597
1kmvA	186	67.03	c.71.1.1	72757
1mk4A	157	67.57	d.108.1.1	84979
1a76A	326	68.01	a.60.7.1,c.120.1.2	18091,33361
1ewnA	219	68.03	b.46.1.2	25762
2ixmA	303	68.88	a.268.1.1	137776
1aolA	228	72.51	b.20.1.1	23840
2q2gA	180	72.86		
2zcwA	202	75.97		
1bnkA	216	77.77	b.46.1.2	25765
1tzyA	129	81.84	a.22.1.1	107530
1kpgA	287	81.95	c.66.1.18	68735
1aoiC	116	84.51	a.22.1.1	16440
1qs1A	462	86.94	d.166.1.1,d.166.1.1	42260,42261
2cohA	202	87.39	a.4.5.4,b.82.3.2	130677,130678