# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igqA	285	8.623		
1ycsB	239	13.58	d.211.1.1,b.34.2.1	19155,24553
1yewA	382	26.12		
1spvA	184	26.29	c.50.1.2	98957
2rfmA	192	29.34		
2i6vA	87	29.67		
1n0qA	93	31.72	k.37.1.1	79754
1kmvA	186	35.50	c.71.1.1	72757
1f76A	336	36.02	c.1.4.1	76160
1n71A	180	36.19	d.108.1.1	85370
2cthA	107	37.17	a.138.1.1	19652
2ixmA	303	39.97	a.268.1.1	137776
1u8bA	133	42.01		
1te5A	257	45.13	d.153.1.1	106795
1vhuA	211	48.52	c.50.1.2	100703
1kpgA	287	49.75	c.66.1.18	68735
1yocA	147	49.91	d.38.1.5	123778
1pdkB	157	50.13	b.2.3.2	22427
1mk4A	157	51.16	d.108.1.1	84979
2jabA	136	52.40		
1lshB	319	53.70	f.7.1.1	74245
1pdgA	109	53.97	g.17.1.1	44748
2uubE	162	55.18	d.14.1.1,d.50.1.2	139936,139937
1zgwA	139	56.01		
1xmkA	79	57.20	a.4.5.19	122165
2az4A	429	57.20	d.157.1.10	127597
2cwaA	263	58.14		
2dlxA	153	58.59		
1aj2	282	59.17		
2zcwA	202	66.63		
2q2gA	180	68.47		
1z1dA	103	68.62	a.4.5.16	124351
1b43A	340	72.85	a.60.7.1,c.120.1.2	18092,33362
1aolA	228	73.05	b.20.1.1	23840
1ewnA	219	73.54	b.46.1.2	25762
2g62A	325	73.90	a.268.1.1	134685
2covD	104	74.19		
1cd31	152	77.16		
2rmzA	43	82.24		
1zl8A	53	84.37	a.194.1.1	125238
2dznA	228	84.59		
1iabA	200	84.75	d.92.1.8	40312
2e5sA	98	84.91		
1hbnA	549	85.57	a.89.1.1,d.58.31.2	60898,60899
1mroA	548	85.73	a.89.1.1,d.58.31.2	18525,39443
1a76A	326	87.52	a.60.7.1,c.120.1.2	18091,33361
1x9mA	698	88.29	c.55.3.5,e.8.1.1	114999,115000
1bnkA	216	88.84	b.46.1.2	25765
1mkkA	96	89.53	g.17.1.1	79240
1oy3D	282	89.91	d.211.1.1	87554