# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1wmxA	205	3.265	b.18.1.24	109418
2choA	716	4.008	a.246.1.1,c.1.8.10,d.92.2.3	130479,130480,130481
1n0qA	93	8.380	k.37.1.1	79754
1z1dA	103	12.07	a.4.5.16	124351
2f8yA	223	17.98		
2uubE	162	23.32	d.14.1.1,d.50.1.2	139936,139937
1fe0A	68	31.91	d.58.17.1	39345
1spvA	184	37.15	c.50.1.2	98957
1f0nA	285	37.30	c.69.1.3	34636
1fjgE	162	43.10	d.14.1.1,d.50.1.2	37553,38789
2dxqA	150	43.53		
2fl4A	149	44.36	d.108.1.1	133706
1cc8A	73	44.99	d.58.17.1	39343
3bw8A	217	50.48		
1tx9A	151	51.24	a.84.1.1	119383
1kpgA	287	51.79	c.66.1.18	68735
2uubK	129	52.78	c.55.4.1	139942
2ge3A	170	54.78	d.108.1.1	135044
2covD	104	57.73		
2fiaA	162	58.99	d.108.1.1	133514
1tiqA	180	62.01	d.108.1.1	107010
2a5lA	200	62.38	c.23.5.8	126176
1pdgA	109	62.93	g.17.1.1	44748
1mk4A	157	64.65	d.108.1.1	84979
2g62A	325	65.12	a.268.1.1	134685
1ywyA	74	65.62	b.55.2.1	124166
2pr7A	137	68.52		
2cy2A	174	69.21	d.108.1.1	131016
1uohA	226	70.41	d.211.1.1	99690
1bd8A	156	71.62	d.211.1.1	19157
1ojqA	212	72.34	d.166.1.1	93146
1wq8A	110	73.45	g.17.1.1	114832
1b4gA	30	77.92	j.12.1.1	46144
3bqoA	211	79.51		
2fckA	181	85.16	d.108.1.1	133272
2sicI	107	88.35	d.84.1.1	40031
2oucA	142	88.86		
1qnrA	344	89.24	c.1.8.3	28834