# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2choA	716	3.159	a.246.1.1,c.1.8.10,d.92.2.3	130479,130480,130481
1wmxA	205	3.688	b.18.1.24	109418
1n0qA	93	9.357	k.37.1.1	79754
1z1dA	103	12.17	a.4.5.16	124351
2f8yA	223	19.72		
2uubE	162	25.27	d.14.1.1,d.50.1.2	139936,139937
1kpgA	287	28.36	c.66.1.18	68735
2covD	104	30.20		
1f0nA	285	34.70	c.69.1.3	34636
1spvA	184	35.88	c.50.1.2	98957
1fe0A	68	36.08	d.58.17.1	39345
2dxqA	150	38.52		
1ywyA	74	39.16	b.55.2.1	124166
2fl4A	149	43.06	d.108.1.1	133706
2fiaA	162	46.58	d.108.1.1	133514
1fjgE	162	47.75	d.14.1.1,d.50.1.2	37553,38789
2ge3A	170	48.28	d.108.1.1	135044
1tiqA	180	50.44	d.108.1.1	107010
1cc8A	73	52.66	d.58.17.1	39343
2uubK	129	56.38	c.55.4.1	139942
2cy2A	174	56.43	d.108.1.1	131016
1pdgA	109	58.31	g.17.1.1	44748
1mk4A	157	62.53	d.108.1.1	84979
3bw8A	217	63.53		
2oucA	142	69.16		
1yd9A	193	70.75	c.50.1.2	122976
1tx9A	151	73.51	a.84.1.1	119383
1on0A	158	76.81	d.108.1.1	87095
1yvoA	172	77.32	d.108.1.1	124106
1n4qB	377	79.62	a.102.4.3	91636
1yr0A	175	79.63	d.108.1.1	123905
2sicI	107	81.34	d.84.1.1	40031
2g62A	325	82.41	a.268.1.1	134685
1a8rA	221	82.60	d.96.1.1	40587
2fckA	181	85.09	d.108.1.1	133272
2rddB	37	87.32		
2z10A	194	88.49