# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1lshB	319	1.447	f.7.1.1	74245
1yewA	382	2.649		
1q7lB	88	7.449		
1mkkA	96	9.021	g.17.1.1	79240
1z1dA	103	9.292	a.4.5.16	124351
1fe0A	68	9.925	d.58.17.1	39345
1dpuA	99	11.89	a.4.5.16	16150
2cfuA	658	19.82		
2pdoA	144	21.24		
1ywyA	74	22.65	b.55.2.1	124166
1h2sB	60	24.29	f.13.1.1	76579
1jy2N	53	24.91	h.1.8.1	67440
1cd31	152	27.53		
1fzvA	132	32.73	g.17.1.1	60159
2pmvA	399	34.00		
1fltV	98	35.62	g.17.1.1	44751
2d73A	738	35.92		
1prn	289	37.36		
2gnnA	127	39.12		
1tx9A	151	39.61	a.84.1.1	119383
1nzjA	298	40.06	c.26.1.1	92377
1wq8A	110	41.43	g.17.1.1	114832
2p5qA	170	41.68		
2covD	104	43.59		
2rddB	37	44.53		
1qazA	351	45.17	a.102.3.1	18848
1e7lA	157	46.05	a.140.4.1,d.4.1.5	64728,64729
3blnA	143	47.06		
1wh8A	111	47.82	a.35.1.7	114636
2v5jA	287	54.75		
2dj5A	133	54.93	c.92.1.3	131536
1lb2B	84	55.05	a.60.3.1	77871
1dxrH	258	59.63	b.41.1.1,f.23.10.1	25456,43433
1zczA	464	60.12	c.24.1.3,c.97.1.4	124923,124924
2c8eE	211	60.16		
1syxB	86	61.82	d.76.1.1	119081
1vkwA	218	63.65	d.90.1.2	108695
2qa0A	519	63.69		
1k66A	149	66.47	c.23.1.1	90941
2cw3A	280	67.92		
1afpA	51	68.00	g.26.1.1	44947
2r7hA	177	69.86		
2rcvA	202	71.80		
1l6hA	69	73.64	a.52.1.1	77723
1qojA	63	75.19	a.2.9.1	15716
2yzsA	315	75.37		
1cseI	71	76.41	d.40.1.1	38559
2ob0A	170	76.46		
1itbB	315	77.79	b.1.1.4,b.1.1.4,b.1.1.4	21720,21721,21722
1p16A	395	82.04	b.40.4.6,d.142.2.3	87661,87662
2zcwA	202	82.09		
2ge7A	108	82.47	d.254.1.2	135049
1rss	151	83.79		
2fe7A	166	86.08	d.108.1.1	133325
2h58A	330	86.99