# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2dduA	387	0.9625		
1ztxE	108	3.370	b.1.18.4	125658
1b9dA	163	5.891	c.55.3.2	33649
1yrkA	126	7.656		
2ns2A	242	13.82		
2dbjA	124	14.18		
2i53A	258	24.25		
2hs3A	603	27.76	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	136712,136713,136714,136715
2v24A	208	27.94		
1hyvA	166	30.87	c.55.3.2	61424
2b5iB	214	39.93	b.1.2.1,b.1.2.1	127896,127897
3bfxA	296	40.81		
2hbtA	247	43.03		
2h3bA	494	44.11		
1ei5A	520	44.12	b.61.3.1,b.61.3.1,e.3.1.1	27418,27419,42772
2pgcA	207	44.16		
1zupA	315	45.17	c.55.3.11	125681
2p9mA	138	45.91		
1bl3A	160	48.84	c.55.3.2	33655
1s0aA	429	50.25	c.67.1.4	98263
1itg	166	50.42		
2bx9A	53	53.68		
1g3mA	294	54.38	c.37.1.5	83268
2debA	653	54.76		
2dnjA	260	56.22	d.151.1.1	41790
2oryA	346	56.97		
2fiyA	309	57.21	e.59.1.1	133540
1exqA	154	59.82	c.55.3.2	33646
1xrkA	124	60.60	d.32.1.2	115881
2h1zA	39	61.03		
2o3hA	285	61.35		
2h3kA	144	61.52		
1bpv	112	63.99		
1wchA	315	66.84	c.45.1.2	114508
1aquA	297	67.07	c.37.1.5	31942
1gsjA	258	67.79	c.73.1.2	70397
3pcgA	200	68.22	b.3.6.1	22647
1tqzA	133	70.01	b.55.1.11	119327
1m2oB	190	71.88	c.37.1.8	78485
1pz7A	204	72.49	b.29.1.4	95405
1m26A	133	75.01		
1sacA	204	76.18	b.29.1.5	24237
1qhhA	167	77.12	c.37.1.19	32393
1t3gA	159	77.99		
487dH	224	82.55	i.1.1.2	45835
2igiA	180	87.12		
1kk1A	410	88.67	b.43.3.1,b.44.1.1,c.37.1.8	72634,72635,72636