# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2odiA	238	0.2290		
1v47A	349	1.962	b.122.1.3,c.26.1.5	100292,100293
1i52A	236	9.111	c.68.1.13	61767
2q7nA	488	9.844		
1fxoA	293	19.25	c.68.1.6	34524
1dgwX	79	19.27	b.82.1.2	28091
2cirA	297	24.04		
1h5rA	293	26.29	c.68.1.6	65623
1lvwA	295	32.14	c.68.1.6	84723
1yfsA	465	35.47	a.203.1.1,d.104.1.1	123088,123089
1jykA	254	37.54	c.68.1.13	67458
1wy2A	351	38.51		
2v94A	107	39.02		
1q98A	165	39.25	c.47.1.10	96253
1jyoA	130	39.28	d.198.1.1	67483
1xuvA	178	41.56	d.129.3.5	116069
1v74A	107	42.69	d.243.1.1	100442
2cx4A	164	43.76	c.47.1.10	130973
2pgcA	207	44.48		
2nwfA	141	44.59		
1h7eA	245	47.83	c.68.1.13	60717
1bowA	159	49.40	d.60.1.1	39528
1sqhA	312	50.24	d.108.1.5	98966
1fqtA	112	54.04	b.33.1.1	24441
2ywiA	196	54.05		
2e4qA	109	54.54		
3c0dA	119	55.03		
1ammA	174	57.95	b.11.1.1,b.11.1.1	23587,23588
1nycA	111	58.33	b.61.2.2	92336
1cxqA	162	58.96	c.55.3.2	33621
2ijzA	428	58.98		
2p9wA	334	60.14		
2b3wA	168	62.01	d.336.1.1	127800
1xm3A	264	64.12	c.1.31.1	115461
2bv2A	83	66.75		
2b3gA	123	68.87	b.40.4.3	127786
1orvA	728	69.71	b.70.3.1,c.69.1.24	87354,87355
1oxwA	373	72.59	c.19.1.3	87539
2djwA	92	73.92		
2p0lA	288	74.09		
2jo6A	113	77.81		
1iznA	286	79.33	e.43.1.1	83847
1vc4A	254	80.54	c.1.2.4	100557
2p5vA	162	82.11		
2co7B	221	82.60		
1m8uA	173	85.46	b.11.1.1,b.11.1.1	91233,91234
2ia0A	171	86.85		
1zirA	173	87.24	b.11.1.1,b.11.1.1	125126,125127
1x9pA	523	87.37		
2j7qA	232	87.77		
2yziA	138	87.79		
2rl8A	154	88.25		
2i7fA	108	89.89