# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2odiA	238	0.3356		
1v47A	349	6.028	b.122.1.3,c.26.1.5	100292,100293
1dgwX	79	10.38	b.82.1.2	28091
1q98A	165	19.41	c.47.1.10	96253
1xm3A	264	21.66	c.1.31.1	115461
1i52A	236	21.86	c.68.1.13	61767
1wy2A	351	23.03		
1fqtA	112	25.11	b.33.1.1	24441
2q7nA	488	25.88		
1zxfA	155	34.30	d.129.3.5	125771
2ijzA	428	36.01		
1jykA	254	36.44	c.68.1.13	67458
2cx4A	164	39.02	c.47.1.10	130973
2e4qA	109	39.04		
1jyoA	130	39.16	d.198.1.1	67483
2j7qA	232	39.16		
1h7eA	245	39.47	c.68.1.13	60717
3c0dA	119	40.02		
2p9wA	334	40.42		
1vc4A	254	41.83	c.1.2.4	100557
2geyA	158	42.48		
2f06A	144	43.37	d.58.18.11,d.58.18.11	132652,132653
2ywiA	196	48.40		
2nwfA	141	49.96		
2h7dA	101	52.49		
1fxoA	293	52.54	c.68.1.6	34524
1nwwA	149	54.77	d.17.4.8	86306
2nnwA	376	55.45		
1h5rA	293	58.56	c.68.1.6	65623
2hc9A	491	66.01		
1bowA	159	67.08	d.60.1.1	39528
2cirA	297	67.34		
2jo6A	113	68.97		
2zgyA	320	69.13		
1a6sA	87	69.93	a.61.1.4	18134
2b3gA	123	70.42	b.40.4.3	127786
1xuvA	178	71.54	d.129.3.5	116069
1yfsA	465	72.19	a.203.1.1,d.104.1.1	123088,123089
2i7fA	108	73.36		
1t06A	235	73.90	a.118.1.17	106194
2rl8A	154	84.20		
2p7oA	133	86.18		
1gs5A	258	89.76	c.73.1.2	70395
1wy3A	35	89.77