# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
4bclA	366	0.7374	b.75.1.1	27968
1lam	484	0.7861		
1lamA	484	1.477	c.50.1.1,c.56.5.3	33166,33829
4bcl	366	1.698		
2boyA	254	2.839		
2odiA	238	4.968		
1q98A	165	5.806	c.47.1.10	96253
2cirA	297	7.942		
1r62A	160	8.453	d.122.1.3	104816
2fgqX	332	9.574	f.4.3.1	133439
2burB	241	9.877	b.3.6.1	129228
1jc4A	148	10.87	d.32.1.4	62863
2oaaA	249	11.66		
3c8wA	255	11.84		
1a8d	452	12.54		
2a6vA	226	14.92	b.29.1.13	126312
1rwzA	245	16.27	d.131.1.2,d.131.1.2	98005,98006
1hfuA	503	17.14	b.6.1.3,b.6.1.3,b.6.1.3	65827,65828,65829
1gytA	503	17.77	c.50.1.1,c.56.5.3	70765,70766
1fxoA	293	18.71	c.68.1.6	34524
2j7qA	232	19.99		
1qg3A	195	20.04	b.1.2.1,b.1.2.1	21993,21994
2f1lA	187	21.76	b.41.1.4,b.43.3.4	132780,132781
2cx4A	164	21.89	c.47.1.10	130973
1i52A	236	22.30	c.68.1.13	61767
1lvwA	295	23.01	c.68.1.6	84723
1se8A	301	23.44	b.40.4.3	105448
2hpuA	175	23.62		
2jc9A	555	24.33		
1gkpA	458	25.04	b.92.1.3,c.1.9.6	70231,70232
1dmhA	311	28.67	b.3.6.1	22633
2dkaA	544	28.96		
2j5wA	1065	30.02	b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3	138067,138068,138069,138070,138071
2nlrA	234	30.71	b.29.1.11	24344
2qv2A	342	32.26		
2qzbA	166	34.34		
1qcsA	211	34.66	b.52.2.3,d.31.1.1	26927,38461
1x31B	404	36.31		
1pe9A	361	37.48	b.80.1.1	94595
2glxA	332	38.12		
1dgwX	79	40.33	b.82.1.2	28091
2euiA	153	42.00	d.108.1.1	132387
1arb	268	44.26		
1vc4A	254	44.63	c.1.2.4	100557
1tmxA	293	44.97		
1vlbA	907	46.30	a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1	108739,108740,108741,108742
3buuA	229	46.47		
3cpnA	330	48.88		
3c26A	266	49.97		
1s9rA	410	50.99	d.126.1.4	98758
1ga6A	372	51.13	c.41.1.2	32556
2hkdA	320	52.78		
1koeA	172	53.59	d.169.1.5	42448
2d0oA	610	54.70	c.8.6.1,c.55.1.6,c.55.1.6	131075,131076,131077
1bowA	159	54.92	d.60.1.1	39528
1j7jA	178	55.58	c.61.1.1	84131
1xuvA	178	56.01	d.129.3.5	116069
2h14A	317	56.36		
2ajrA	331	56.53	c.72.1.1	126892
1xezA	721	57.70		
2q4oA	215	58.29	c.129.1.1	139872
2v5iA	559	60.69		
2e12A	101	60.96		
1vicA	262	61.55	c.68.1.13	100756
1budA	197	61.99	d.92.1.9	40328
3thiA	371	62.33	c.94.1.1	35792
1peqA	714	63.09	a.98.1.1,c.7.1.2	104131,104132
2bv2A	83	63.72		
2reeA	224	64.30		
1nycA	111	65.18	b.61.2.2	92336
1xcrA	316	65.34	d.290.1.2	121860
1h5rA	293	66.52	c.68.1.6	65623
2pi6A	361	67.46		
1v73A	342	67.88		
3pcgM	238	68.66	b.3.6.1	22742
1moqA	368	70.88	c.80.1.1	35302
1w9pA	433	71.01	c.1.8.5,d.26.3.1	114412,114413
1lf6A	684	71.27	a.102.1.5,b.30.5.5	77918,77919
1wdpA	495	71.65	c.1.8.1	120907
3c0bA	334	72.53		
1dxeA	256	72.95	c.1.12.5	29310
1tzzA	392	73.35	c.1.11.2,d.54.1.1	112896,112897
2e4qA	109	76.49		
1a8y	367	76.69		
2dx0A	138	77.22		
1oxwA	373	77.36	c.19.1.3	87539
1l1qA	186	77.97	c.61.1.1	77653
3bk5A	237	78.52		
1jovA	270	78.97	b.30.5.7	84192
1fnoA	417	82.69	d.58.19.1,c.56.5.4	70145,75841
2bonA	332	84.83		
2ezvA	269	85.41		
1h7eA	245	85.45	c.68.1.13	60717
1lwjA	441	85.56	b.71.1.1,c.1.8.1	74303,74304
1v74A	107	85.75	d.243.1.1	100442
1vkhA	273	86.83	c.69.1.32	108662
2gp4A	628	86.84	c.8.2.2,d.334.1.1	135448,135449
1jyoA	130	87.31	d.198.1.1	67483
2pz4A	239	88.47		
2djwA	92	89.16