# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2odiA	238	0.2494		
1v47A	349	3.230	b.122.1.3,c.26.1.5	100292,100293
2q7nA	488	8.819		
1dgwX	79	11.30	b.82.1.2	28091
1xm3A	264	16.09	c.1.31.1	115461
2cx4A	164	19.24	c.47.1.10	130973
1q98A	165	20.80	c.47.1.10	96253
2htmA	268	34.10		
2p7oA	133	35.66		
2geyA	158	36.73		
1i52A	236	38.05	c.68.1.13	61767
1vc4A	254	41.39	c.1.2.4	100557
1fxoA	293	42.30	c.68.1.6	34524
1jykA	254	45.45	c.68.1.13	67458
1wy2A	351	46.62		
2h7dA	101	49.50		
1jyoA	130	52.56	d.198.1.1	67483
2ywiA	196	53.53		
2b3gA	123	56.18	b.40.4.3	127786
2a6qA	86	56.25	d.306.1.1	126293
2ijzA	428	57.25		
1s55A	156	58.87	b.22.1.1	118865
1h5rA	293	59.73	c.68.1.6	65623
2p9wA	334	62.84		
2nwfA	141	63.10		
2b3wA	168	63.40	d.336.1.1	127800
2fsqA	243	66.00	d.61.1.4	134035
2rl8A	154	66.09		
1t06A	235	67.71	a.118.1.17	106194
1bowA	159	67.76	d.60.1.1	39528
2pgcA	207	67.82		
2hpuA	175	69.25		
2ia0A	171	75.09		
1v74A	107	76.83	d.243.1.1	100442
2oaaA	249	77.26		
1h7eA	245	79.71	c.68.1.13	60717
2jv8A	73	81.20		
2bv2A	83	81.92		
2fqhA	109	82.69		
1nwwA	149	85.83	d.17.4.8	86306
1lvwA	295	87.62	c.68.1.6	84723
3cpnA	330	89.96