# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2i7rA 118 0.8888 d.32.1.2 137102 1xy7A 166 2.995 d.32.1.9 116215 2q48A 166 3.922 d.32.1.9 139829 1ecsA 126 5.075 d.32.1.2 59407 2qqzA 126 5.433 1v47A 349 6.331 b.122.1.3,c.26.1.5 100292,100293 2pjsA 119 6.825 1bco 327 6.930 3c2eA 294 7.370 1u7iA 136 7.612 d.32.1.7 107724 1hh1A 143 7.633 c.52.1.18 61036 2jo6A 113 8.721 1ssxA 198 10.80 b.47.1.1 98978 1tmxA 293 11.65 1rwzA 245 12.55 d.131.1.2,d.131.1.2 98005,98006 2p7oA 133 12.89 1bcoA 327 13.23 b.48.1.1,c.55.3.3 26431,33676 1qznA 173 13.45 b.2.2.2 104669 1aipA 405 13.55 b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 1wguA 136 13.77 b.55.1.2 114623 2fgtA 417 15.55 1f9zA 135 17.17 d.32.1.1 38484 1o54A 277 17.39 c.66.1.13 92482 1ugpB 226 17.43 b.34.4.4 107832 1zv9A 172 18.64 b.2.2.2 125700 2pfeA 186 20.70 2h5cA 198 21.16 b.47.1.1 136145 2qh0A 138 21.66 1fxjA 331 22.05 b.81.1.4,c.68.1.5 28062,34520 1suuA 312 24.32 b.68.10.1 99006 3c1mA 473 24.55 1k3sA 113 25.53 d.198.1.1 68120 1uheA 97 28.35 1f60A 458 28.66 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 2fkiA 126 28.70 d.198.3.1 133657 1jnyA 435 29.97 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1whmA 92 30.58 b.34.10.1 114647 1exg 110 31.47 1bkf 107 32.87 2ggoA 401 34.43 1fa8A 135 34.79 d.32.1.1 38486 2pnwA 380 36.30 2ih3B 212 37.54 2g3aA 152 38.66 d.108.1.1 134557 1z94A 147 39.44 d.129.3.5 124740 1sqhA 312 39.83 d.108.1.5 98966 2fk9A 157 39.93 3baeL 218 41.32 2dp9A 124 44.92 b.122.1.5 131609 2hl5C 97 48.26 1q2lA 939 48.33 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 1v9yA 167 48.35 d.110.3.2 108454 1u6lA 149 49.23 d.32.1.7 113067 1wznA 252 51.03 c.66.1.43 121525 2g82A 331 51.35 c.2.1.3,d.81.1.1 134746,134747 2ex4A 241 53.21 c.66.1.42 132516 1zi0A 307 54.63 1dmhA 311 55.35 b.3.6.1 22633 2elaA 175 56.78 2d4eA 515 59.14 1lvwA 295 59.90 c.68.1.6 84723 1yrkA 126 59.90 2cntA 160 60.40 2b79A 144 60.70 2j6lA 500 61.64 1w9aA 147 61.65 b.45.1.1 114408 2g5dA 422 62.61 2rbbA 141 63.49 2i8dA 123 63.81 1y71A 130 64.44 b.34.16.1 122677 2aq6A 147 65.47 b.45.1.1 127156 2ouaA 188 66.84 1ncwL 219 67.57 b.1.1.1,b.1.1.2 85557,85558 2bbdA 350 68.14 1twfA 1733 68.17 e.29.1.2 112725 2a08A 60 69.33 1vr9A 213 70.79 d.37.1.1,d.37.1.1 120446,120447 1djrD 103 71.00 b.40.2.1 24865 2qk0A 74 71.19 2impA 479 71.88 1xrkA 124 72.42 d.32.1.2 115881 1xuvA 178 72.92 d.129.3.5 116069 1al3A 324 73.27 c.94.1.1 35835 1nnxA 109 73.45 b.40.10.1 92013 1zanL 214 76.80 1ss4A 153 77.85 d.32.1.6 105976 2fl4A 149 78.40 d.108.1.1 133706 1ry9A 145 79.20 d.198.1.1 98094 1wmdA 434 79.68 b.18.1.20,c.41.1.1 109408,109409 1f89A 291 80.54 d.160.1.1 64988 1wndA 495 80.79 c.82.1.1 114751 3brkX 420 80.94 1yavA 159 81.70 d.37.1.1,d.37.1.1 116595,116596 1noaA 113 82.02 b.1.7.1 22208 2pfiA 164 82.06 1nkiA 135 82.55 d.32.1.2 91941 2uxyA 341 82.57 1al3 324 82.95 1wu2A 396 83.22 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 1rxzA 245 83.58 d.131.1.2,d.131.1.2 98067,98068 1itwA 741 83.62 c.77.1.2 76793 1rurL 217 84.62 b.1.1.1,b.1.1.2 97881,97882 1z45A 699 86.10 b.30.5.4,c.2.1.2 124427,124428 2oseA 234 86.11 1maiA 131 87.09 b.55.1.1 26951 1a0rB 340 88.83 b.69.4.1 27658 1ootA 60 88.96 b.34.2.1 93386 1i12A 160 89.17 d.108.1.1 61515 2j4xA 213 89.32 1mexL 213 89.52 b.1.1.1,b.1.1.2 91259,91260