# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2odiA	238	1.126		
1v47A	349	6.730	b.122.1.3,c.26.1.5	100292,100293
1dgwX	79	9.558	b.82.1.2	28091
2dyqA	144	21.17		
2qqzA	126	35.38		
1qwiA	143	39.06	d.227.1.1	96474
3tdtA	274	41.48	b.81.1.2	28053
2okcA	445	41.89		
1umwA	237	42.09	d.223.1.2,d.223.1.2	99631,99632
1bl3A	160	45.15	c.55.3.2	33655
2ijzA	428	45.71		
1fqtA	112	46.73	b.33.1.1	24441
1gs5A	258	47.40	c.73.1.2	70395
2j7qA	232	47.58		
1xuvA	178	49.40	d.129.3.5	116069
1itg	166	52.56		
2rkvA	451	55.79		
1sjwA	144	55.92	d.17.4.9	98899
1olmA	403	59.53	a.5.3.1,b.132.1.1,c.13.1.1	104008,104009,104010
1exqA	154	61.36	c.55.3.2	33646
1eguA	731	61.48	a.102.3.2,b.24.1.1,b.30.5.2	18850,23899,24423
1auuA	55	62.94	b.35.2.1	24769
1qg3A	195	68.80	b.1.2.1,b.1.2.1	21993,21994
2cviA	83	68.92		
2jo6A	113	69.04		
2iueA	212	69.71		
1uwcA	261	69.84	c.69.1.17	100101
1dhr	241	69.85		
1jfbA	404	70.25	a.104.1.1	66624
1uypA	432	71.63	b.29.1.19,b.67.2.3	100176,100177
1cnvA	299	72.91	c.1.8.5	28989
2h4tA	626	75.06		
1n7oA	721	77.02	a.102.3.2,b.24.1.1,b.30.5.2	80259,80260,80261
2h7dA	101	78.15		
2vr4A	846	78.99		
2aorA	223	82.33		
1mskA	331	84.77	d.173.1.1	42495
1v74A	107	84.80	d.243.1.1	100442
1aua	296	85.72		
1pz7A	204	85.73	b.29.1.4	95405