# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2odiA	238	1.775		
1v47A	349	2.705	b.122.1.3,c.26.1.5	100292,100293
1dgwX	79	14.76	b.82.1.2	28091
2iueA	212	21.25		
1cnvA	299	33.47	c.1.8.5	28989
2okcA	445	38.92		
2qqzA	126	40.91		
1qg3A	195	41.69	b.1.2.1,b.1.2.1	21993,21994
1olmA	403	48.05	a.5.3.1,b.132.1.1,c.13.1.1	104008,104009,104010
1qwiA	143	52.47	d.227.1.1	96474
2j7qA	232	53.17		
1auuA	55	53.98	b.35.2.1	24769
1fqtA	112	54.08	b.33.1.1	24441
1v74A	107	54.32	d.243.1.1	100442
1uqwA	509	62.71	c.94.1.1	99799
1uwcA	261	63.42	c.69.1.17	100101
2ijzA	428	65.10		
1wy2A	351	66.90		
2cviA	83	71.56		
1gs5A	258	72.72	c.73.1.2	70395
1hkqA	132	74.84	a.4.5.10	83555
1lvwA	295	75.52	c.68.1.6	84723
1aua	296	77.16		
1mskA	331	85.36	d.173.1.1	42495
2aexA	346	85.50		
2vfrA	422	85.85		
1cc5	83	86.31		
2oaaA	249	86.98		
1eguA	731	87.25	a.102.3.2,b.24.1.1,b.30.5.2	18850,23899,24423
3tdtA	274	89.51	b.81.1.2	28053
1f02T	66	89.58	j.67.1.1	46360