# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2odiA	238	0.7848		
1v47A	349	3.572	b.122.1.3,c.26.1.5	100292,100293
1dgwX	79	20.05	b.82.1.2	28091
1cnvA	299	20.85	c.1.8.5	28989
2iueA	212	24.70		
2okcA	445	41.08		
2rijA	387	45.09		
1qwiA	143	46.05	d.227.1.1	96474
1v74A	107	49.98	d.243.1.1	100442
1uwcA	261	50.33	c.69.1.17	100101
2bonA	332	52.19		
1uqwA	509	52.39	c.94.1.1	99799
1bowA	159	53.45	d.60.1.1	39528
1h4aX	173	57.30	b.11.1.1,b.11.1.1	83479,83480
1itg	166	59.34		
1lvwA	295	59.44	c.68.1.6	84723
3tdtA	274	61.53	b.81.1.2	28053
2vfrA	422	71.05		
2nxvA	249	71.91		
1f02T	66	72.20	j.67.1.1	46360
1q7sA	117	74.04	c.131.1.1	96055
1exqA	154	75.79	c.55.3.2	33646
1rlkA	117	75.92	c.131.1.1	97651
1v58A	241	78.76	c.47.1.9,d.17.3.1	108371,108372
1olmA	403	78.90	a.5.3.1,b.132.1.1,c.13.1.1	104008,104009,104010
2v94A	107	80.11		
2vr4A	846	80.42		
2oaaA	249	80.83		
2ijzA	428	81.34		
1mskA	331	81.58	d.173.1.1	42495
2pulA	397	82.61		
2qqzA	126	87.84		
1nycA	111	89.31	b.61.2.2	92336
1qg3A	195	89.44	b.1.2.1,b.1.2.1	21993,21994
1mp4A	292	89.50	c.68.1.6	79376