# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2odiA	238	0.7009		
1v47A	349	6.102	b.122.1.3,c.26.1.5	100292,100293
1dgwX	79	19.79	b.82.1.2	28091
2okcA	445	20.78		
1sjwA	144	25.70	d.17.4.9	98899
2iueA	212	41.89		
3tdtA	274	45.19	b.81.1.2	28053
1qg3A	195	47.86	b.1.2.1,b.1.2.1	21993,21994
1uwcA	261	48.06	c.69.1.17	100101
2rkvA	451	48.96		
1cnvA	299	55.33	c.1.8.5	28989
2dyqA	144	55.58		
1qwiA	143	58.13	d.227.1.1	96474
1olmA	403	65.82	a.5.3.1,b.132.1.1,c.13.1.1	104008,104009,104010
1uqwA	509	66.12	c.94.1.1	99799
1m7xA	617	73.19	b.1.18.2,b.71.1.1,c.1.8.1	78749,78750,78751
1xn9A	101	74.40	d.12.1.3	115578
1dhr	241	74.50		
2oaaA	249	74.70		
2ijzA	428	78.43		
2k3aA	155	80.12		
1eguA	731	80.34	a.102.3.2,b.24.1.1,b.30.5.2	18850,23899,24423
2jv8A	73	85.88		
1gs5A	258	86.75	c.73.1.2	70395
2oplA	187	87.58		
1h4aX	173	87.93	b.11.1.1,b.11.1.1	83479,83480
1bowA	159	88.83	d.60.1.1	39528
1mskA	331	89.26	d.173.1.1	42495