# TARGET T0393 # Using neural net dunbrack-40pc-3157-t2k-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0393.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 24.1977 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 Y 0.046 0.020 0.351 0.018 0.008 0.006 0.016 0.002 0.045 0.069 0.017 0.287 0.115 2 D 0.032 0.024 0.481 0.004 0.007 0.006 0.013 0.001 0.046 0.052 0.021 0.095 0.219 3 A 0.008 0.052 0.510 0.004 0.012 0.010 0.003 0.001 0.019 0.094 0.025 0.089 0.173 4 D 0.001 0.005 0.892 0.001 0.006 0.005 0.001 0.001 0.007 0.039 0.016 0.019 0.010 5 S 0.001 0.004 0.094 0.004 0.305 0.202 0.001 0.001 0.004 0.073 0.280 0.003 0.031 6 E 0.001 0.006 0.056 0.006 0.189 0.289 0.001 0.001 0.002 0.052 0.380 0.016 0.003 7 Q 0.002 0.016 0.155 0.002 0.165 0.428 0.001 0.001 0.007 0.073 0.103 0.010 0.039 8 R 0.002 0.014 0.201 0.003 0.023 0.599 0.001 0.001 0.007 0.057 0.066 0.014 0.013 9 K 0.002 0.006 0.076 0.002 0.016 0.780 0.001 0.001 0.003 0.038 0.048 0.012 0.016 10 S 0.002 0.001 0.024 0.001 0.012 0.917 0.001 0.001 0.001 0.012 0.018 0.004 0.007 11 L 0.002 0.001 0.008 0.001 0.005 0.960 0.001 0.001 0.001 0.007 0.009 0.003 0.003 12 H 0.004 0.001 0.007 0.001 0.006 0.961 0.001 0.001 0.001 0.005 0.007 0.004 0.005 13 L 0.002 0.001 0.002 0.001 0.004 0.985 0.001 0.001 0.001 0.001 0.003 0.001 0.002 14 A 0.002 0.001 0.001 0.001 0.003 0.987 0.001 0.001 0.001 0.001 0.003 0.001 0.001 15 A 0.002 0.001 0.001 0.001 0.003 0.988 0.001 0.001 0.001 0.001 0.003 0.001 0.001 16 V 0.001 0.001 0.001 0.001 0.003 0.984 0.001 0.001 0.001 0.001 0.007 0.001 0.001 17 F 0.001 0.001 0.005 0.001 0.003 0.962 0.001 0.001 0.002 0.001 0.023 0.001 0.001 18 T 0.001 0.001 0.008 0.001 0.002 0.968 0.001 0.001 0.001 0.002 0.017 0.001 0.001 19 C 0.001 0.001 0.008 0.001 0.003 0.961 0.001 0.001 0.001 0.005 0.022 0.001 0.001 20 N 0.001 0.001 0.010 0.001 0.003 0.957 0.001 0.001 0.001 0.005 0.025 0.001 0.001 21 F 0.001 0.001 0.006 0.001 0.003 0.981 0.001 0.001 0.001 0.002 0.008 0.001 0.001 22 T 0.001 0.001 0.002 0.001 0.002 0.993 0.001 0.001 0.001 0.001 0.004 0.001 0.001 23 N 0.001 0.001 0.001 0.001 0.002 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 24 H 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 M 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 Y 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 A 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 29 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 31 E 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 32 L 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 33 L 0.001 0.001 0.001 0.001 0.004 0.989 0.001 0.001 0.001 0.001 0.006 0.001 0.001 34 K 0.001 0.001 0.001 0.001 0.012 0.949 0.001 0.001 0.001 0.001 0.038 0.001 0.001 35 K 0.001 0.001 0.005 0.001 0.018 0.937 0.001 0.001 0.001 0.003 0.037 0.001 0.001 36 Y 0.001 0.001 0.024 0.001 0.023 0.376 0.001 0.001 0.001 0.054 0.521 0.001 0.001 37 N 0.001 0.001 0.069 0.001 0.001 0.010 0.001 0.001 0.001 0.063 0.854 0.001 0.001 38 L 0.001 0.004 0.857 0.001 0.001 0.005 0.001 0.001 0.003 0.122 0.005 0.003 0.001 39 P 0.001 0.011 0.879 0.001 0.006 0.015 0.001 0.001 0.036 0.038 0.004 0.002 0.007 40 F 0.001 0.007 0.193 0.008 0.183 0.424 0.002 0.009 0.072 0.042 0.048 0.002 0.011 41 D 0.001 0.003 0.068 0.022 0.360 0.331 0.004 0.015 0.075 0.050 0.057 0.008 0.006 42 V 0.001 0.005 0.086 0.001 0.214 0.329 0.005 0.058 0.253 0.016 0.021 0.006 0.007 43 M 0.001 0.004 0.067 0.001 0.015 0.599 0.003 0.049 0.207 0.016 0.027 0.002 0.009 44 L 0.002 0.006 0.071 0.005 0.024 0.792 0.002 0.016 0.023 0.030 0.016 0.011 0.002 45 P 0.001 0.001 0.023 0.001 0.037 0.878 0.001 0.001 0.006 0.009 0.043 0.001 0.002 46 L 0.001 0.002 0.037 0.001 0.025 0.849 0.001 0.001 0.002 0.014 0.068 0.001 0.001 47 I 0.001 0.001 0.024 0.001 0.027 0.903 0.001 0.001 0.001 0.006 0.038 0.001 0.001 48 D 0.001 0.001 0.015 0.001 0.042 0.890 0.001 0.001 0.001 0.012 0.038 0.001 0.001 49 E 0.001 0.001 0.005 0.001 0.017 0.934 0.001 0.001 0.001 0.008 0.035 0.001 0.001 50 T 0.001 0.001 0.022 0.001 0.018 0.916 0.001 0.001 0.001 0.015 0.028 0.001 0.001 51 A 0.001 0.001 0.012 0.001 0.015 0.956 0.001 0.001 0.001 0.004 0.012 0.001 0.001 52 R 0.001 0.001 0.002 0.001 0.018 0.966 0.001 0.001 0.001 0.002 0.010 0.001 0.001 53 K 0.001 0.001 0.004 0.001 0.025 0.949 0.001 0.001 0.001 0.002 0.018 0.001 0.001 54 V 0.001 0.001 0.005 0.001 0.016 0.965 0.001 0.001 0.001 0.002 0.011 0.001 0.001 55 H 0.001 0.001 0.014 0.001 0.040 0.871 0.001 0.001 0.002 0.005 0.065 0.001 0.001 56 E 0.001 0.002 0.037 0.001 0.118 0.600 0.001 0.001 0.004 0.020 0.213 0.001 0.003 57 L 0.001 0.011 0.149 0.001 0.026 0.396 0.001 0.001 0.005 0.193 0.206 0.005 0.005 58 E 0.001 0.009 0.721 0.001 0.007 0.057 0.001 0.001 0.006 0.151 0.035 0.008 0.003 59 P 0.001 0.007 0.337 0.001 0.147 0.348 0.001 0.001 0.005 0.044 0.094 0.001 0.016 60 K 0.001 0.005 0.079 0.006 0.247 0.407 0.001 0.001 0.004 0.055 0.186 0.006 0.002 61 T 0.001 0.009 0.089 0.002 0.357 0.322 0.001 0.002 0.011 0.052 0.137 0.004 0.013 62 A 0.001 0.010 0.216 0.005 0.142 0.345 0.001 0.009 0.037 0.085 0.124 0.011 0.013 63 Q 0.006 0.025 0.215 0.008 0.100 0.180 0.004 0.005 0.024 0.155 0.234 0.022 0.022 64 T 0.009 0.016 0.272 0.008 0.053 0.145 0.003 0.002 0.017 0.229 0.199 0.012 0.035 65 G 0.009 0.013 0.423 0.019 0.028 0.078 0.003 0.002 0.019 0.236 0.086 0.056 0.026 66 P 0.012 0.016 0.337 0.009 0.086 0.191 0.005 0.003 0.032 0.091 0.102 0.029 0.087 67 A 0.014 0.016 0.175 0.012 0.101 0.419 0.009 0.013 0.034 0.048 0.069 0.032 0.057 68 I 0.025 0.020 0.113 0.022 0.104 0.410 0.010 0.013 0.053 0.048 0.080 0.045 0.058 69 R 0.015 0.016 0.190 0.003 0.061 0.372 0.009 0.007 0.049 0.057 0.135 0.032 0.054 70 Y 0.003 0.020 0.236 0.002 0.020 0.324 0.003 0.005 0.018 0.160 0.179 0.012 0.015 71 D 0.001 0.004 0.575 0.001 0.006 0.263 0.001 0.001 0.006 0.084 0.054 0.002 0.003 72 E 0.001 0.001 0.009 0.001 0.025 0.940 0.001 0.001 0.001 0.008 0.015 0.001 0.001 73 N 0.001 0.001 0.003 0.001 0.035 0.939 0.001 0.001 0.001 0.002 0.020 0.001 0.001 74 V 0.001 0.001 0.003 0.001 0.030 0.950 0.001 0.001 0.001 0.002 0.013 0.001 0.001 75 I 0.001 0.001 0.004 0.001 0.005 0.980 0.001 0.001 0.001 0.001 0.008 0.001 0.001 76 G 0.001 0.001 0.002 0.001 0.010 0.975 0.001 0.001 0.001 0.002 0.011 0.001 0.001 77 N 0.001 0.001 0.001 0.001 0.007 0.968 0.001 0.001 0.001 0.002 0.023 0.001 0.001 78 H 0.001 0.001 0.005 0.001 0.003 0.974 0.001 0.001 0.001 0.003 0.016 0.001 0.001 79 L 0.001 0.001 0.008 0.001 0.014 0.963 0.001 0.001 0.001 0.002 0.012 0.001 0.001 80 R 0.001 0.001 0.005 0.001 0.069 0.876 0.001 0.001 0.001 0.002 0.045 0.001 0.001 81 M 0.001 0.001 0.011 0.001 0.055 0.721 0.001 0.001 0.002 0.004 0.204 0.001 0.001 82 L 0.001 0.003 0.128 0.001 0.056 0.533 0.001 0.001 0.004 0.106 0.162 0.002 0.001 83 A 0.001 0.004 0.179 0.001 0.065 0.338 0.001 0.001 0.001 0.161 0.251 0.001 0.001 84 D 0.001 0.004 0.230 0.001 0.027 0.215 0.001 0.001 0.001 0.292 0.231 0.001 0.001 85 D 0.001 0.004 0.388 0.001 0.021 0.229 0.001 0.001 0.001 0.321 0.034 0.001 0.001 86 P 0.001 0.002 0.073 0.001 0.082 0.786 0.001 0.001 0.001 0.021 0.034 0.001 0.001 87 A 0.001 0.001 0.009 0.001 0.070 0.899 0.001 0.001 0.001 0.004 0.018 0.001 0.001 88 M 0.001 0.001 0.002 0.001 0.021 0.971 0.001 0.001 0.001 0.001 0.004 0.001 0.001 89 Q 0.001 0.001 0.001 0.001 0.005 0.992 0.001 0.001 0.001 0.001 0.002 0.001 0.001 90 R 0.001 0.001 0.001 0.001 0.002 0.994 0.001 0.001 0.001 0.001 0.002 0.001 0.001 91 L 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.002 0.001 0.001 92 Y 0.001 0.001 0.001 0.001 0.002 0.991 0.001 0.001 0.001 0.001 0.006 0.001 0.001 93 E 0.001 0.001 0.002 0.001 0.005 0.976 0.001 0.001 0.001 0.001 0.016 0.001 0.001 94 L 0.001 0.001 0.006 0.001 0.005 0.959 0.001 0.001 0.001 0.002 0.025 0.001 0.001 95 L 0.001 0.001 0.033 0.001 0.008 0.887 0.001 0.001 0.002 0.010 0.055 0.002 0.002 96 S 0.001 0.001 0.047 0.001 0.020 0.828 0.001 0.001 0.001 0.020 0.077 0.001 0.003 97 R 0.001 0.002 0.039 0.001 0.040 0.790 0.001 0.001 0.001 0.033 0.088 0.003 0.003 98 S 0.002 0.006 0.095 0.002 0.062 0.678 0.001 0.001 0.007 0.029 0.095 0.009 0.013 99 I 0.003 0.008 0.107 0.003 0.080 0.647 0.001 0.002 0.009 0.030 0.076 0.008 0.025 100 H 0.005 0.010 0.152 0.010 0.121 0.461 0.002 0.002 0.014 0.059 0.126 0.022 0.018 101 E 0.004 0.009 0.130 0.002 0.133 0.384 0.002 0.001 0.012 0.055 0.226 0.012 0.031 102 R 0.003 0.022 0.312 0.005 0.046 0.202 0.001 0.001 0.012 0.171 0.177 0.017 0.029 103 Q 0.001 0.011 0.643 0.002 0.023 0.066 0.001 0.001 0.005 0.165 0.055 0.018 0.010