# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2i76A	276	1.40e-14		
2i5tA	188	2.897		
2hx5A	152	3.872	d.38.1.1	136837
1vmeA	410	4.533	c.23.5.1,d.157.1.3	108893,108894
1khyA	148	16.92	a.174.1.1	77410
2fvgA	340	19.07	b.49.3.1,c.56.5.4	134201,134202
1h3gA	601	24.90	b.1.18.2,b.71.1.1,c.1.8.1	90594,90595,90596
3c24A	286	27.31		
1bvqA	141	28.94	d.38.1.1	38542
1adtA	356	33.54	a.54.1.1,g.51.1.1,g.51.1.1	17887,45362,45368
2d0bA	310	39.15		
1bgf	124	40.75		
1x0vA	354	43.69		
2ftsA	419	43.73	b.85.6.1,b.103.1.1,c.57.1.2	134079,134080,134081
3b5qA	482	46.59		
2jbhA	225	47.10		
1n0qA	93	49.15	k.37.1.1	79754
2jgdA	933	50.83		
2q9uA	414	56.15		
1ueoA	63	58.71	j.107.1.1	99269
2co5A	99	60.67		
2uytA	489	65.97		
1tf1A	198	67.37	d.110.2.2	106826
2brxA	244	67.71	c.73.1.3	129028
2b5aA	77	69.55	a.35.1.3	127882
2d2jA	329	69.93	c.1.9.3	131175
1dd8A	406	69.93	c.95.1.1,c.95.1.1	35932,35933
1y9iA	178	70.16	a.195.1.1	116586
1j5yA	187	72.62	a.4.5.1,d.94.2.1	71592,71593
1xmpA	170	74.54	c.23.8.1	115521
2ef8A	84	76.68		
3b57A	209	77.18		
1z54A	132	77.49	d.38.1.1	124450
1lxjA	104	80.42	d.58.48.1	84736
3bjnA	165	80.62		
1zv1A	65	81.02		
1abaA	87	81.64	c.47.1.1	32760
2rfmA	192	82.92		
1s9rA	410	86.46	d.126.1.4	98758
2dgdA	223	86.89		
2b0jA	358	89.08	a.100.1.11,c.2.1.6	127639,127640