# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2i76A	276	7.91e-17		
1vmeA	410	1.222	c.23.5.1,d.157.1.3	108893,108894
2i5tA	188	2.169		
2hx5A	152	10.60	d.38.1.1	136837
3c24A	286	13.06		
1h3gA	601	17.42	b.1.18.2,b.71.1.1,c.1.8.1	90594,90595,90596
2fvgA	340	18.52	b.49.3.1,c.56.5.4	134201,134202
1x0vA	354	22.72		
1odoA	408	26.62	a.104.1.1	92783
2ftsA	419	29.54	b.85.6.1,b.103.1.1,c.57.1.2	134079,134080,134081
2jbhA	225	32.17		
3bjnA	165	32.57		
2b0jA	358	33.16	a.100.1.11,c.2.1.6	127639,127640
1bgf	124	36.56		
1ueoA	63	37.85	j.107.1.1	99269
2uytA	489	38.56		
2q9uA	414	38.66		
2jgdA	933	41.51		
1adtA	356	41.99	a.54.1.1,g.51.1.1,g.51.1.1	17887,45362,45368
1n0qA	93	42.97	k.37.1.1	79754
1nfn	191	43.98		
1khyA	148	44.37	a.174.1.1	77410
2d0bA	310	46.73		
1uohA	226	47.47	d.211.1.1	99690
2rfmA	192	50.46		
1tf1A	198	50.63	d.110.2.2	106826
2dkyA	91	55.28		
1t9kA	347	56.04	c.124.1.5	106721
3b5qA	482	56.47		
1dpbA	243	61.39	c.43.1.1	32618
2d4wA	504	64.74		
3b57A	209	65.83		
2ef8A	84	66.64		
1e5dA	402	67.76	c.23.5.1,d.157.1.3	31208,42061
1z7gA	217	68.52	c.61.1.1	124624
1bvqA	141	72.21	d.38.1.1	38542
2g3kA	94	73.91	a.24.28.1	134562
2jabA	136	74.21		
2brxA	244	75.31	c.73.1.3	129028
1kngA	156	75.78	c.47.1.10	72777
1s9rA	410	77.82	d.126.1.4	98758
1z82A	335	77.97		
2b5aA	77	78.67	a.35.1.3	127882
1zv1A	65	79.42		
2ou1A	77	82.68		
1wdyA	285	86.04	d.211.1.1	114541
2d2jA	329	86.82	c.1.9.3	131175
2rfaA	232	86.84		
1yrlA	491	88.62		
1me8A	503	88.73	c.1.5.1	79028