# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2i76A	276	1.372		
1yrlA	491	5.874		
2uytA	489	6.530		
1ybdA	239	7.962	c.73.1.3	122884
2ahrA	259	8.977	a.100.1.10,c.2.1.6	126775,126776
2a4dA	160	17.38	d.20.1.1	126152
2f0xA	148	18.58	d.38.1.5	132673
2co5A	99	21.43		
1iynA	295	23.03	a.93.1.1	90722
2bneA	241	25.06	c.73.1.3	128824
1qq9A	284	26.25	c.56.5.4	33841
1wdyA	285	30.62	d.211.1.1	114541
2e8vA	340	31.34		
2j9uA	96	31.76	a.24.28.1	138155
2g3kA	94	35.28	a.24.28.1	134562
1np3A	338	36.42	a.100.1.2,c.2.1.6	85946,85947
1uohA	226	38.99	d.211.1.1	99690
1kvkA	395	39.97	d.14.1.5,d.58.26.3	73060,73061
2o8nA	265	41.66		
1n0qA	93	42.95	k.37.1.1	79754
2gwdA	449	45.04		
2odiA	238	46.23		
2zcoA	293	47.22		
1ustA	93	50.73	a.4.5.13	99884
2ij2A	470	52.13	a.104.1.1	137449
1khyA	148	53.68	a.174.1.1	77410
1qmgA	524	55.91	a.100.1.2,c.2.1.6	18785,30182
2dznA	228	56.68		
2qisA	374	58.17		
1zn6A	227	60.04	d.303.1.1	125373
1aba	87	60.39		
1ql0A	241	60.77	d.4.1.2	37139
1e1oA	504	61.51	b.40.4.1,d.104.1.1	25258,40714
2izzA	322	63.56		
1zv1A	65	66.93		
2ogxB	270	69.35		
1pprM	312	75.14	a.131.1.1,a.131.1.1	19502,19503
2gifA	1057	75.58		
2ooxA	137	78.33		
2bf5A	98	79.09	d.137.1.1	128405
1vpdA	299	82.36	a.100.1.1,c.2.1.6	113951,113952
2ou1A	77	84.36		
2ihiA	395	85.56