# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2i76A 276 1.738 1zcbA 362 3.921 a.66.1.1,c.37.1.8 124901,124902 2ywxA 157 4.216 2r6oA 294 6.587 1qczA 169 6.711 c.23.8.1 31276 1zcaA 359 8.193 a.66.1.1,c.37.1.8 124897,124898 1tadA 324 8.750 a.66.1.1,c.37.1.8 18194,32077 2nt0A 497 10.79 b.71.1.2,c.1.8.3 138561,138562 1xmpA 170 12.57 c.23.8.1 115521 1o4vA 183 12.84 c.23.8.1 86628 2dqbA 376 14.58 2q88A 257 15.01 1q3qA 548 18.64 a.129.1.2,c.8.5.2,d.56.1.2 95704,95705,95706 2h5nA 133 19.20 2ef8A 84 20.94 2v3gA 283 21.66 2qkbA 154 21.99 2p58C 116 22.82 3b7hA 78 23.93 2o4aA 93 24.13 1a6dB 543 27.26 a.129.1.2,c.8.5.2,d.56.1.2 19489,30820,38937 3bqsA 93 27.38 2citA 282 30.12 c.1.8.3 130499 1u11A 182 30.23 c.23.8.1 107576 2b5aA 77 30.95 a.35.1.3 127882 1rhcA 330 31.19 c.1.16.3 97468 1d1qA 161 32.79 c.44.1.1 32642 1z7mA 344 32.81 d.104.1.1 124632 2in3A 216 33.59 1ddzA 496 34.57 c.53.2.1,c.53.2.1 33372,33373 1mn8A 100 35.09 a.61.1.6 79318 1in4A 334 35.64 a.4.5.11,c.37.1.20 62597,62598 3bs3A 76 39.52 1fn9A 365 41.55 d.196.1.1 59894 2h26A 291 46.30 b.1.1.2,d.19.1.1 135990,135991 2uytA 489 46.44 3bs4A 260 47.42 1cipA 353 47.78 a.66.1.1,c.37.1.8 18210,32093 1jogA 146 48.29 a.24.16.2 77142 2ppxA 99 48.92 1xuuA 349 49.62 b.85.1.1,c.1.10.6 116067,116068 1v38A 78 50.31 a.60.1.2 100280 1fl1A 230 51.22 b.57.1.1 27023 3c8nA 356 53.39 1gakA 141 53.54 a.19.1.1 16415 2jdiA 510 53.61 1vi1A 345 54.18 c.77.1.4 100724 2ev1A 222 54.47 2qacA 146 55.73 1x0vA 354 57.09 2hi1A 330 57.21 2pn1A 331 57.40 2nr7A 195 57.46 1tzzA 392 57.74 c.1.11.2,d.54.1.1 112896,112897 2gm5A 139 58.11 1twfA 1733 58.28 e.29.1.2 112725 2otaA 76 58.39 2f2sA 406 58.60 2eucA 130 63.58 a.249.1.1 132382 1wtyA 119 68.14 a.24.16.2 114880 1gai 472 68.40 1f75A 249 69.93 c.101.1.1 59662 1z00B 84 70.10 a.60.2.5 124295 2f06A 144 70.55 d.58.18.11,d.58.18.11 132652,132653 2cprA 124 71.56 a.60.8.4 130705 1bedA 181 71.58 c.47.1.13 90330 1vz0A 230 74.22 a.4.14.1,d.268.1.1 108929,108930 2chpA 153 74.66 1n62B 809 75.49 d.41.1.1,d.133.1.1 80092,80093 1ccwB 483 75.59 c.1.19.2 29646 2dtjA 178 76.45 2v25A 259 76.82 1yt3A 375 77.10 a.60.8.3,a.60.8.3,c.55.3.5 123992,123993,123994 1dpgA 485 78.07 c.2.1.3,d.81.1.5 30074,39989 1j77A 209 78.20 a.132.1.2 62674 1jetA 517 78.98 c.94.1.1 35718 1yacA 208 79.15 c.33.1.3 31757 1in6A 334 80.63 a.4.5.11,c.37.1.20 62601,62602 2ozlB 341 81.55 c.36.1.7,c.48.1.2 139447,139448 1x0pA 143 82.19 d.58.10.2 121552 2pr7A 137 82.30 2hi0A 240 82.56 1mkmA 249 82.70 a.4.5.33,d.110.2.2 79242,79243 1im5A 180 82.75 c.33.1.3 66211 1k66A 149 83.80 c.23.1.1 90941 1vptA 348 86.85 c.66.1.25 34207 2p9jA 162 87.13 2aq9A 262 88.03 b.81.1.1 127167 1rcqA 357 88.94 b.49.2.2,c.1.6.1 104882,104883 1hqkA 154 89.10 c.16.1.1 65902 1xovA 326 89.33 b.34.11.4,c.56.5.6 122206,122207