# TARGET T0393 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-pb-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 16 (1 pb ) # The input amino acid frequencies were determined from # alignment T0393.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 24.6639 # Pos AA A B C D E F G H I J K L M N O P 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 Y 0.080 0.037 0.253 0.591 0.002 0.007 0.002 0.004 0.002 0.001 0.003 0.006 0.005 0.001 0.003 0.007 2 D 0.011 0.022 0.244 0.494 0.008 0.188 0.001 0.001 0.003 0.002 0.002 0.003 0.007 0.001 0.001 0.013 3 A 0.014 0.055 0.037 0.760 0.011 0.052 0.001 0.005 0.001 0.001 0.053 0.004 0.006 0.001 0.001 0.001 4 D 0.001 0.013 0.002 0.016 0.006 0.896 0.001 0.003 0.001 0.001 0.010 0.047 0.004 0.001 0.001 0.001 5 S 0.001 0.004 0.001 0.004 0.002 0.010 0.001 0.003 0.001 0.001 0.951 0.010 0.013 0.001 0.001 0.001 6 E 0.001 0.026 0.002 0.003 0.001 0.003 0.001 0.001 0.002 0.001 0.020 0.917 0.014 0.001 0.005 0.002 7 Q 0.007 0.008 0.072 0.005 0.001 0.011 0.017 0.001 0.003 0.001 0.013 0.072 0.656 0.002 0.036 0.095 8 R 0.015 0.005 0.082 0.006 0.001 0.024 0.013 0.001 0.001 0.001 0.032 0.024 0.731 0.005 0.005 0.056 9 K 0.014 0.017 0.046 0.017 0.001 0.042 0.006 0.003 0.001 0.001 0.062 0.071 0.694 0.005 0.010 0.011 10 S 0.003 0.018 0.032 0.048 0.001 0.019 0.006 0.002 0.002 0.001 0.031 0.062 0.750 0.003 0.005 0.019 11 L 0.006 0.006 0.031 0.054 0.001 0.014 0.003 0.001 0.001 0.001 0.018 0.039 0.819 0.001 0.003 0.005 12 H 0.002 0.002 0.013 0.029 0.001 0.029 0.001 0.001 0.001 0.001 0.015 0.022 0.883 0.001 0.001 0.002 13 L 0.001 0.002 0.003 0.026 0.001 0.011 0.001 0.001 0.001 0.001 0.020 0.020 0.916 0.001 0.001 0.001 14 A 0.001 0.002 0.001 0.018 0.001 0.002 0.001 0.001 0.001 0.001 0.003 0.019 0.953 0.001 0.001 0.001 15 A 0.001 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.988 0.001 0.001 0.001 16 V 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.990 0.001 0.001 0.001 17 F 0.001 0.001 0.001 0.004 0.001 0.002 0.003 0.001 0.001 0.001 0.002 0.002 0.979 0.004 0.001 0.001 18 T 0.001 0.002 0.003 0.005 0.001 0.003 0.011 0.001 0.001 0.001 0.004 0.005 0.924 0.025 0.007 0.008 19 C 0.001 0.001 0.001 0.001 0.001 0.008 0.007 0.001 0.001 0.001 0.005 0.006 0.941 0.007 0.015 0.004 20 N 0.001 0.002 0.001 0.001 0.001 0.003 0.002 0.001 0.001 0.001 0.039 0.009 0.922 0.005 0.003 0.009 21 F 0.004 0.002 0.002 0.001 0.001 0.002 0.003 0.001 0.001 0.001 0.024 0.107 0.835 0.007 0.005 0.006 22 T 0.001 0.001 0.002 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.006 0.020 0.963 0.001 0.003 0.001 23 N 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.007 0.982 0.001 0.001 0.001 24 H 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.011 0.985 0.001 0.001 0.001 25 M 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.992 0.001 0.001 0.001 26 Y 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.998 0.001 0.001 0.001 27 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 28 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 29 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 30 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 31 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 32 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 33 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 34 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.986 0.008 0.002 0.002 35 K 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.016 0.968 0.001 0.005 36 Y 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.020 0.001 0.964 0.006 37 N 0.001 0.001 0.013 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.002 0.001 0.001 0.977 38 L 0.973 0.003 0.008 0.004 0.001 0.002 0.002 0.001 0.001 0.001 0.002 0.001 0.004 0.001 0.001 0.002 39 P 0.002 0.016 0.059 0.003 0.003 0.846 0.003 0.004 0.001 0.001 0.013 0.025 0.022 0.001 0.001 0.001 40 F 0.001 0.005 0.001 0.008 0.001 0.006 0.001 0.002 0.001 0.001 0.946 0.012 0.015 0.001 0.001 0.001 41 D 0.001 0.011 0.002 0.004 0.001 0.002 0.001 0.001 0.001 0.001 0.004 0.951 0.019 0.001 0.002 0.001 42 V 0.003 0.002 0.034 0.009 0.001 0.012 0.018 0.001 0.001 0.001 0.019 0.033 0.841 0.002 0.004 0.021 43 M 0.005 0.012 0.058 0.019 0.001 0.006 0.005 0.002 0.001 0.001 0.013 0.041 0.818 0.002 0.006 0.012 44 L 0.001 0.002 0.009 0.013 0.001 0.024 0.004 0.001 0.001 0.001 0.009 0.019 0.906 0.003 0.002 0.005 45 P 0.001 0.001 0.002 0.006 0.001 0.009 0.001 0.001 0.001 0.001 0.041 0.010 0.925 0.001 0.001 0.002 46 L 0.001 0.004 0.001 0.007 0.001 0.005 0.001 0.001 0.001 0.001 0.021 0.098 0.853 0.003 0.001 0.003 47 I 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.001 0.001 0.001 0.007 0.020 0.960 0.002 0.002 0.001 48 D 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.989 0.001 0.001 0.001 49 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.016 0.967 0.002 0.001 0.004 50 T 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.980 0.001 0.002 0.001 51 A 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.001 0.004 0.001 0.973 0.012 0.001 0.002 52 R 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.008 0.962 0.003 0.017 0.003 53 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.955 0.002 0.003 0.032 54 V 0.004 0.001 0.005 0.001 0.001 0.001 0.009 0.001 0.001 0.001 0.004 0.004 0.942 0.010 0.005 0.013 55 H 0.002 0.008 0.029 0.006 0.001 0.005 0.013 0.003 0.001 0.001 0.003 0.010 0.856 0.019 0.025 0.021 56 E 0.004 0.008 0.021 0.017 0.007 0.015 0.097 0.002 0.004 0.001 0.015 0.005 0.408 0.284 0.017 0.096 57 L 0.038 0.074 0.240 0.056 0.001 0.004 0.010 0.025 0.003 0.001 0.009 0.019 0.187 0.003 0.252 0.079 58 E 0.036 0.014 0.174 0.058 0.005 0.224 0.032 0.001 0.018 0.052 0.009 0.016 0.201 0.007 0.004 0.148 59 P 0.094 0.015 0.027 0.022 0.009 0.115 0.008 0.005 0.001 0.001 0.516 0.012 0.162 0.008 0.003 0.004 60 K 0.002 0.287 0.022 0.077 0.004 0.014 0.005 0.012 0.005 0.001 0.056 0.437 0.051 0.011 0.009 0.005 61 T 0.011 0.034 0.106 0.105 0.006 0.048 0.043 0.007 0.013 0.004 0.023 0.100 0.347 0.015 0.077 0.062 62 A 0.012 0.019 0.205 0.061 0.003 0.055 0.012 0.006 0.007 0.002 0.035 0.025 0.418 0.005 0.011 0.124 63 Q 0.044 0.091 0.114 0.155 0.039 0.051 0.066 0.006 0.014 0.004 0.034 0.055 0.136 0.115 0.005 0.071 64 T 0.030 0.131 0.335 0.290 0.002 0.013 0.006 0.024 0.004 0.001 0.006 0.012 0.051 0.002 0.051 0.043 65 G 0.013 0.016 0.443 0.297 0.006 0.031 0.008 0.001 0.012 0.019 0.007 0.004 0.055 0.002 0.001 0.084 66 P 0.089 0.029 0.134 0.309 0.017 0.180 0.006 0.006 0.001 0.001 0.061 0.023 0.134 0.003 0.003 0.005 67 A 0.004 0.053 0.037 0.331 0.020 0.192 0.007 0.019 0.004 0.003 0.151 0.081 0.085 0.004 0.004 0.004 68 I 0.007 0.099 0.021 0.159 0.054 0.113 0.054 0.013 0.007 0.006 0.060 0.229 0.126 0.035 0.008 0.008 69 R 0.010 0.038 0.041 0.093 0.011 0.066 0.021 0.047 0.008 0.003 0.098 0.054 0.394 0.006 0.083 0.027 70 Y 0.012 0.108 0.116 0.082 0.002 0.031 0.005 0.007 0.032 0.014 0.028 0.107 0.186 0.002 0.006 0.262 71 D 0.037 0.002 0.006 0.002 0.003 0.309 0.016 0.001 0.001 0.004 0.027 0.055 0.522 0.008 0.002 0.003 72 E 0.002 0.015 0.004 0.002 0.001 0.004 0.001 0.006 0.001 0.001 0.655 0.017 0.288 0.001 0.005 0.001 73 N 0.001 0.005 0.001 0.003 0.001 0.003 0.001 0.001 0.002 0.001 0.011 0.787 0.181 0.002 0.001 0.004 74 V 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.005 0.009 0.979 0.001 0.002 0.001 75 I 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.013 0.979 0.001 0.001 0.001 76 G 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.995 0.001 0.001 0.001 77 N 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 78 H 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.993 0.001 0.001 0.001 79 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.996 0.002 0.001 0.001 80 R 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 81 M 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.002 0.978 0.006 0.002 0.008 82 L 0.001 0.001 0.002 0.001 0.001 0.001 0.025 0.001 0.001 0.001 0.001 0.002 0.914 0.039 0.004 0.012 83 A 0.001 0.003 0.009 0.001 0.001 0.001 0.019 0.003 0.001 0.001 0.004 0.003 0.770 0.053 0.099 0.034 84 D 0.005 0.033 0.031 0.005 0.001 0.002 0.015 0.001 0.005 0.001 0.004 0.015 0.290 0.015 0.035 0.542 85 D 0.070 0.001 0.018 0.001 0.001 0.124 0.018 0.001 0.001 0.001 0.006 0.015 0.720 0.003 0.010 0.011 86 P 0.002 0.001 0.002 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.825 0.008 0.152 0.001 0.001 0.001 87 A 0.001 0.004 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.016 0.922 0.055 0.001 0.001 0.001 88 M 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.029 0.961 0.001 0.001 0.001 89 Q 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.010 0.986 0.001 0.001 0.001 90 R 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.995 0.001 0.001 0.001 91 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.997 0.001 0.001 0.001 92 Y 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 93 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 94 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.996 0.002 0.001 0.001 95 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.003 0.001 96 S 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.980 0.007 0.001 0.007 97 R 0.001 0.001 0.003 0.002 0.001 0.001 0.002 0.001 0.001 0.001 0.003 0.001 0.962 0.010 0.006 0.009 98 S 0.001 0.003 0.008 0.006 0.001 0.004 0.005 0.001 0.001 0.001 0.002 0.010 0.895 0.018 0.009 0.038 99 I 0.003 0.004 0.021 0.007 0.001 0.006 0.018 0.001 0.001 0.001 0.010 0.006 0.867 0.016 0.013 0.028 100 H 0.005 0.025 0.048 0.033 0.003 0.012 0.028 0.008 0.001 0.001 0.009 0.016 0.725 0.021 0.029 0.037 101 E 0.009 0.020 0.054 0.047 0.030 0.024 0.127 0.005 0.006 0.003 0.016 0.011 0.368 0.190 0.015 0.075 102 R 0.031 0.035 0.118 0.057 0.019 0.033 0.086 0.052 0.006 0.003 0.035 0.027 0.262 0.059 0.132 0.047 103 Q 0.026 0.062 0.124 0.083 0.015 0.050 0.057 0.039 0.033 0.039 0.043 0.036 0.172 0.023 0.078 0.120