# List of top-scoring protein chains for T0393.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2i76A	276	2.93e-07		
1hxcA	548	39.77	a.102.4.1,a.128.1.3	83643,83644
5eauA	548	39.85	a.102.4.1,a.128.1.3	18851,19443
1y7oA	218	50.72	c.14.1.1	122701
1hxgA	548	53.11	a.102.4.1,a.128.1.3	83645,83646
1hxaA	548	53.27	a.102.4.1,a.128.1.3	83641,83642
5easA	548	57.10	a.102.4.1,a.128.1.3	18852,19444
5eatA	548	57.16	a.102.4.1,a.128.1.3	18853,19445
2dmfA	137	61.56		
1octC	156	63.60	a.4.1.1,a.35.1.1	15991,17017
1n10A	241	67.10	b.7.3.1,b.52.1.3	79774,79775
1gt0C	159	72.64	a.4.1.1,a.35.1.1	76335,76336
2z1eA	338	73.24		
1cqtA	163	74.85	a.4.1.1,a.35.1.1	15992,17018
2co5A	99	83.26