# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2py6A	409	14.28		
2a4dA	160	15.54	d.20.1.1	126152
2etbA	256	21.16		
1i36A	264	32.09	a.100.1.8,c.2.1.6	71108,71109
2d0bA	310	32.33		
2p3rA	510	35.09	c.55.1.4,c.55.1.4	139471,139472
2co5A	99	35.86		
2f8yA	223	37.30		
1e19A	314	38.01	c.73.1.1	34967
1nthA	458	38.38	c.1.25.1	80730
2ooxA	137	41.00		
2f6lA	166	45.71	a.130.1.4	133049
1w85B	324	46.04	c.36.1.7,c.48.1.2	114336,114337
2j5bA	348	48.01		
1qf6A	642	48.47	c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1	33210,39551,39562,40759
1odoA	408	51.37	a.104.1.1	92783
2uytA	489	51.58		
2gwdA	449	53.32		
1w8gA	234	59.47		
2qisA	374	61.47		
2k29A	53	63.84		
1ux8A	132	64.18	a.1.1.1	113449
1xkpA	246	65.19	a.243.1.3	122086
2dhqA	146	67.14	c.23.13.1	31382
2ozlB	341	68.13	c.36.1.7,c.48.1.2	139447,139448
1f0yA	302	73.09	a.100.1.3,c.2.1.6	18793,30197
2pg3A	232	73.48		
1wdyA	285	73.48	d.211.1.1	114541
1eqfA	280	73.64	a.29.2.1,a.29.2.1	16972,16973
1peaA	385	75.06	c.93.1.1	35662
1umdB	324	75.12	c.36.1.7,c.48.1.2	99600,99601
1tujA	123	75.53		
1swxA	209	76.96	a.224.1.1	106075
2h12A	436	80.78		
1yyhA	253	81.64		
2p71A	132	83.02	a.39.2.1	139516
2aotA	292	89.56	c.66.1.19	127098