# TARGET T0281 # Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0281.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 53 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.001 0.003 0.002 0.002 0.002 0.989 2 W 0.033 0.042 0.022 0.020 0.011 0.037 0.834 3 M 0.034 0.008 0.036 0.026 0.209 0.155 0.532 4 P 0.041 0.009 0.025 0.020 0.156 0.169 0.579 5 P 0.018 0.022 0.004 0.007 0.117 0.014 0.817 6 R 0.015 0.018 0.001 0.009 0.057 0.005 0.894 7 P 0.001 0.001 0.013 0.937 0.016 0.013 0.020 8 E 0.001 0.001 0.005 0.983 0.003 0.007 0.002 9 E 0.001 0.001 0.004 0.990 0.001 0.005 0.001 10 V 0.001 0.001 0.001 0.996 0.001 0.002 0.001 11 A 0.001 0.001 0.001 0.997 0.001 0.002 0.001 12 R 0.001 0.001 0.001 0.996 0.001 0.002 0.001 13 K 0.001 0.001 0.001 0.995 0.001 0.003 0.001 14 L 0.001 0.001 0.001 0.991 0.001 0.005 0.001 15 R 0.001 0.001 0.006 0.967 0.001 0.024 0.002 16 R 0.001 0.001 0.009 0.846 0.010 0.129 0.005 17 L 0.001 0.001 0.008 0.212 0.014 0.761 0.005 18 G 0.001 0.001 0.004 0.013 0.031 0.922 0.029 19 F 0.117 0.010 0.006 0.010 0.059 0.023 0.774 20 V 0.705 0.014 0.011 0.012 0.043 0.007 0.207 21 E 0.810 0.012 0.013 0.015 0.019 0.007 0.123 22 R 0.811 0.008 0.013 0.017 0.027 0.013 0.110 23 M 0.765 0.006 0.012 0.015 0.050 0.028 0.124 24 A 0.609 0.010 0.012 0.014 0.086 0.058 0.211 25 K 0.317 0.011 0.017 0.016 0.220 0.164 0.256 26 G 0.241 0.010 0.015 0.007 0.304 0.138 0.285 27 G 0.304 0.018 0.011 0.003 0.186 0.049 0.429 28 H 0.639 0.011 0.007 0.001 0.129 0.022 0.191 29 R 0.747 0.004 0.004 0.002 0.035 0.012 0.196 30 L 0.900 0.017 0.002 0.001 0.012 0.004 0.064 31 Y 0.832 0.009 0.002 0.001 0.016 0.004 0.134 32 T 0.706 0.039 0.004 0.001 0.070 0.014 0.165 33 H 0.259 0.026 0.004 0.001 0.063 0.015 0.631 34 P 0.042 0.004 0.022 0.001 0.112 0.714 0.105 35 D 0.021 0.005 0.020 0.001 0.139 0.769 0.046 36 G 0.087 0.004 0.012 0.001 0.537 0.139 0.220 37 R 0.323 0.011 0.002 0.001 0.103 0.013 0.548 38 I 0.857 0.040 0.001 0.001 0.009 0.001 0.092 39 V 0.899 0.011 0.001 0.001 0.005 0.001 0.084 40 V 0.865 0.009 0.001 0.001 0.018 0.002 0.105 41 V 0.523 0.026 0.002 0.001 0.054 0.006 0.388 42 P 0.124 0.028 0.007 0.003 0.127 0.025 0.687 43 F 0.030 0.012 0.020 0.004 0.181 0.099 0.655 44 H 0.006 0.005 0.108 0.013 0.235 0.425 0.208 45 S 0.002 0.004 0.350 0.019 0.165 0.344 0.116 46 G 0.004 0.004 0.269 0.026 0.296 0.253 0.148 47 E 0.007 0.033 0.159 0.041 0.259 0.197 0.304 48 L 0.010 0.070 0.015 0.037 0.359 0.026 0.483 49 P 0.009 0.005 0.004 0.038 0.050 0.018 0.876 50 K 0.002 0.002 0.035 0.815 0.019 0.094 0.032 51 G 0.003 0.002 0.024 0.881 0.019 0.047 0.024 52 T 0.001 0.002 0.007 0.955 0.009 0.010 0.015 53 F 0.001 0.001 0.001 0.986 0.003 0.003 0.007 54 K 0.001 0.001 0.001 0.988 0.001 0.006 0.004 55 R 0.001 0.001 0.001 0.987 0.001 0.008 0.002 56 I 0.001 0.001 0.001 0.989 0.004 0.005 0.002 57 L 0.001 0.001 0.001 0.987 0.003 0.005 0.002 58 R 0.001 0.001 0.003 0.960 0.002 0.032 0.002 59 D 0.001 0.001 0.011 0.796 0.010 0.170 0.011 60 A 0.001 0.001 0.020 0.238 0.019 0.698 0.024 61 G 0.001 0.004 0.008 0.020 0.038 0.794 0.135 62 L 0.001 0.007 0.002 0.002 0.099 0.007 0.881 63 T 0.006 0.022 0.001 0.005 0.026 0.001 0.939 64 E 0.001 0.001 0.091 0.826 0.024 0.025 0.032 65 E 0.002 0.001 0.118 0.815 0.014 0.035 0.015 66 E 0.003 0.001 0.124 0.811 0.016 0.027 0.018 67 F 0.007 0.002 0.048 0.851 0.021 0.042 0.029 68 H 0.020 0.002 0.031 0.532 0.044 0.294 0.077 69 N 0.013 0.010 0.025 0.256 0.003 0.534 0.160 70 L 0.001 0.001 0.001 0.001 0.001 0.001 0.998