# List of top-scoring protein chains for T0281.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gefA 123 1.13e-01 1gefA c.52.1.18 60465 1ka9H 200 1.77e+00 c.23.16.1 77308 1n4tA 219 2.14e+00 unknown_sccs -10234 1ax4A 467 2.36e+00 1ax4A c.67.1.2 34391 1qlcA 95 2.80e+00 1qauA b.36.1.1 24776 1qz9A 416 2.93e+00 c.67.1.3 -8180 1gc5A 467 3.15e+00 1gc5A c.72.1.3 60429 1e2rA 567 3.45e+00 1qksA a.3.1.2 15953 b.70.2.1 27712 1qksA 567 3.45e+00 1qksA a.3.1.2 15951 b.70.2.1 27710 1vh7A 265 3.57e+00 c.1.2.1 -5159 1nt9D 221 4.17e+00 i.8.1.1 86154 1dv0A 47 4.40e+00 1dv0A a.5.2.1 16289 1ixkA 315 4.51e+00 unknown_sccs -8099 1ofdA 1520 4.80e+00 b.80.4.1 86935 c.1.4.1 86936 d.153.1.1 86937 1ub0A 258 4.87e+00 c.72.1.2 88394 1pqvD 221 4.92e+00 i.8.1.1 -13193 1i1gA 141 5.12e+00 a.4.5.32 65982 d.58.4.2 65983 1mhwA 175 5.17e+00 d.3.1.1 79132 1hm9A 468 5.23e+00 b.81.1.4 65866 c.68.1.5 65867 1f4iA 45 5.64e+00 1dv0A a.5.2.1 16288 1p91A 269 5.83e+00 unknown_sccs -8054 1ei5A 520 5.89e+00 1ei5A b.61.3.1 27418 b.61.3.1 27419 e.3.1.1 42772 1kclA 686 5.96e+00 b.1.18.2 68445 b.3.1.1 68446 b.71.1.1 68447 c.1.8.1 68448 1gq1A 567 6.30e+00 a.3.1.2 76264 b.70.2.1 76265 1hj5A 567 6.31e+00 1qksA a.3.1.2 15927 b.70.2.1 27684 1jxhA 288 6.33e+00 c.72.1.2 67415 1lngA 87 7.47e+00 d.201.1.1 74045 1myt 146 7.67e+00 1a6m a.1.1.2 15207 1n62C 288 7.99e+00 d.87.2.1 80094 d.145.1.3 80095 1reuA 103 8.18e+00 g.17.1.2 -12602 1fh0A 221 8.70e+00 1cs8A d.3.1.1 59832 1rewA 114 9.10e+00 g.17.1.2 -12600 1es7A 116 9.15e+00 2tgi g.17.1.2 44786 1lba 146 9.46e+00 1lba d.118.1.1 41062 1f02T 66 9.51e+00 1f02T j.67.1.1 46360 1ozaA 371 9.51e+00 1aroL 151 9.87e+00 1lba d.118.1.1 41063 1l2lA 457 1.01e+01 c.72.1.3 77656 1sjyA 159 1.04e+01 d.113.1.1 -10908 1latA 82 1.12e+01 2nllB g.39.1.2 45122 1tplA 456 1.25e+01 1ax4A c.67.1.2 34387 1c3rA 375 1.30e+01 1c3pA c.42.1.2 32607 1cs8A 316 1.30e+01 1cs8A d.3.1.1 37065 1c3pA 375 1.30e+01 1c3pA c.42.1.2 32606 1cjl 312 1.32e+01 1cs8A d.3.1.1 37066 1pq3A 306 1.40e+01 c.42.1.1 -7309 1oeyA 83 1.65e+01 d.15.2.2 -9162 1gvfA 286 1.70e+01 c.1.10.2 70599 1c7gA 456 1.70e+01 c.67.1.2 -8153 1p5jA 372 1.78e+01 1brwA 433 1.79e+01 1brwA a.46.2.1 17764 c.27.1.1 31628 d.41.3.1 38626 1t66D 220 1.85e+01 1cgw 686 1.87e+01 1cxlA b.1.18.2 21822 b.3.1.1 22491 b.71.1.1 27729 c.1.8.1 28716 1rqpA 299 1.88e+01 unknown_sccs -4411 unknown_sccs -7908 1dtuA 686 1.89e+01 1cxlA b.1.18.2 21840 b.3.1.1 22509 b.71.1.1 27747 c.1.8.1 28734 1mhpH 219 1.89e+01 b.1.1.1 84967 b.1.1.2 84968 1d3cA 686 1.89e+01 1cxlA b.1.18.2 21827 b.3.1.1 22496 b.71.1.1 27734 c.1.8.1 28721 1tiqA 180 1.89e+01 1tcmA 686 1.89e+01 1cxlA b.1.18.2 21833 b.3.1.1 22502 b.71.1.1 27740 c.1.8.1 28727 1cdg 686 1.89e+01 1cxlA b.1.18.2 21816 b.3.1.1 22485 b.71.1.1 27723 c.1.8.1 28710 1eo5A 686 1.89e+01 1cxlA b.1.18.2 21828 b.3.1.1 22497 b.71.1.1 27735 c.1.8.1 28722 1ot1A 686 1.90e+01 b.1.18.2 87392 b.3.1.1 87393 b.71.1.1 87394 c.1.8.1 87395 1ot2A 686 1.90e+01 b.1.18.2 87396 b.3.1.1 87397 b.71.1.1 87398 c.1.8.1 87399 1cxlA 686 1.90e+01 1cxlA b.1.18.2 21829 b.3.1.1 22498 b.71.1.1 27736 c.1.8.1 28723 1cgv 686 1.91e+01 1cxlA b.1.18.2 21820 b.3.1.1 22489 b.71.1.1 27727 c.1.8.1 28714 1cgy 686 1.93e+01 1cxlA b.1.18.2 21823 b.3.1.1 22492 b.71.1.1 27730 c.1.8.1 28717 1cgx 686 1.99e+01 1cxlA b.1.18.2 21832 b.3.1.1 22501 b.71.1.1 27739 c.1.8.1 28726 1peeA 180 2.12e+01 1kckA 686 2.12e+01 b.1.18.2 68441 b.3.1.1 68442 b.71.1.1 68443 c.1.8.1 68444 2ahjA 206 2.14e+01 2ahjA d.149.1.1 41772 1ahjA 207 2.15e+01 2ahjA d.149.1.1 41774 1l9aA 87 2.23e+01 d.201.1.1 73710 1p6gE 166 2.26e+01 i.1.1.1 87823 1ng7A 60 2.28e+01 a.178.1.1 85671 1q45A 391 2.28e+01 c.1.4.1 -5199 1q1hA 110 2.30e+01 unknown_sccs -262 1o6cA 388 2.31e+01 c.87.1.3 -8580 1qmhA 347 2.42e+01 1qmhA c.47.2.1 33082 d.68.2.1 39568 1h3oB 76 2.44e+01 a.22.1.3 76645 1mzbA 136 2.46e+01 unknown_sccs -266 1pj9A 686 2.46e+01 b.1.18.2 -2713 b.3.1.1 -2914 b.71.1.1 -4638 c.1.8.1 -5262 1g71A 347 2.47e+01 1g71A unknown_sccs 43268 1q8lA 84 2.58e+01 d.58.17.1 -10072 1skoA 143 2.62e+01 1gojA 355 2.63e+01 c.37.1.9 65419 1umrC 125 2.65e+01 d.169.1.1 -11627 1uosB 126 2.65e+01 1kzfA 230 2.70e+01 d.108.1.3 73354 1lj9A 144 2.72e+01 a.4.5.28 78035 1s6oA 76 2.73e+01 d.58.17.1 -10073 1fw4A 71 2.78e+01 1cll a.39.1.5 60056 1ifqA 138 2.79e+01 1ifqA d.110.4.1 62350 1kl1A 419 2.80e+01 c.67.1.4 72663 1hey 128 2.83e+01 3chy c.23.1.1 31061 1cmf 73 2.83e+01 1cll a.39.1.5 17283 1owxA 121 2.95e+01 d.58.7.1 87494 1rgd 71 3.00e+01 2nllB g.39.1.2 45128 1p4dA 330 3.01e+01 unknown_sccs -10522 1gdc 72 3.06e+01 2nllB g.39.1.2 45127 1ddgA 374 3.08e+01 1amoA b.43.4.1 25671 c.25.1.4 31559 1f71A 67 3.09e+01 1wdcC a.39.1.5 17289 1lktA 104 3.12e+01 1lktA b.90.1.1 28398 1nueA 151 3.18e+01 1npk d.58.6.1 39076 1nskL 152 3.19e+01 1npk d.58.6.1 39083 1lml 478 3.23e+01 1lml d.92.1.3 40295 1gluA 81 3.26e+01 2nllB g.39.1.2 45124 1klaA 112 3.34e+01 2tgi g.17.1.2 44779 1oqyA 368 3.36e+01 a.5.2.1 -347 a.5.2.1 -348 unknown_sccs -1004 d.15.1.1 -9134 1hbnB 442 3.41e+01 1mroB a.89.1.1 60900 d.58.31.2 60901 1k1xA 659 3.50e+01 a.8.3.2 84279 b.30.5.8 84280 c.6.2.2 84281 1kg0C 136 3.51e+01 d.169.1.1 72445 1r4oA 92 3.60e+01 g.39.1.2 -12733 1pm1X 180 3.62e+01 1kfuL 699 3.63e+01 a.39.1.8 68571 b.14.1.1 68572 d.3.1.3 68573 1df0A 700 3.65e+01 1dkvA a.39.1.8 17375 b.14.1.1 23674 d.3.1.3 37106 1o7dC 159 3.69e+01 b.30.5.6 86640 1vetA 124 3.70e+01 1m32A 366 3.74e+01 c.67.1.3 78508 1e6yB 433 3.74e+01 1mroB a.89.1.1 18535 d.58.31.2 39453 1jzoA 216 3.83e+01 c.47.1.9 84267 d.17.3.1 84268 1jzdA 220 3.89e+01 c.47.1.9 84257 d.17.3.1 84258 1b1bA 140 3.91e+01 1bi0 a.4.5.24 16215 a.76.1.1 18421 1eejA 216 3.95e+01 1eejA c.47.1.9 33057 d.17.3.1 38071 1im5A 180 3.97e+01 unknown_sccs 66211 1ymv 129 3.99e+01 3chy c.23.1.1 31045