# List of top-scoring protein chains for T0278.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1w0fA 485 9.65e-66 1tqnA 486 9.79e-66 1pq2A 476 1.07e-63 a.104.1.1 -1470 1suoA 476 1.30e-62 1nr6A 473 1.70e-62 a.104.1.1 -1464 1po5A 476 1.89e-62 a.104.1.1 -1467 1og5A 475 2.34e-62 a.104.1.1 86982 1r9oA 477 6.10e-62 2hpdA 471 3.53e-51 1bu7A a.104.1.1 18939 1bvyA 458 3.65e-51 1bu7A a.104.1.1 18943 1jpzA 473 3.68e-51 a.104.1.1 67069 1bu7A 455 3.78e-51 1bu7A a.104.1.1 18937 1p0wA 455 8.77e-51 a.104.1.1 -1447 1p0xA 455 9.87e-51 a.104.1.1 -1449 1smiA 471 1.19e-50 1jmeA 455 1.98e-50 a.104.1.1 66885 1fahA 471 2.41e-50 1bu7A a.104.1.1 18945 1p0vA 455 3.06e-50 a.104.1.1 -1445 1n97A 389 4.27e-47 a.104.1.1 80335 1h5zA 455 2.67e-42 a.104.1.1 -1456 1u13A 455 3.62e-42 1odoA 408 1.54e-28 a.104.1.1 -1463 1pkfA 419 1.40e-27 a.104.1.1 -1453 1q5dA 419 1.57e-27 a.104.1.1 -1454 1cpt 428 3.48e-27 1cpt a.104.1.1 18968 1gwiA 411 3.94e-27 a.104.1.1 76364 1jipA 403 6.83e-27 a.104.1.1 66748 1uedA 406 9.33e-27 a.104.1.1 -1459 1eupA 403 9.97e-27 1rom a.104.1.1 18967 1jioA 403 1.25e-26 a.104.1.1 66747 1ehgA 403 1.15e-25 1rom a.104.1.1 18956 1cmnA 402 1.19e-25 1rom a.104.1.1 18958 1ehfA 403 2.72e-25 1rom a.104.1.1 18957 1cmjA 402 2.81e-25 1rom a.104.1.1 18959 1jfbA 404 3.06e-25 a.104.1.1 66624 1gejA 403 3.11e-25 1rom a.104.1.1 18954 1cl6A 402 3.21e-25 1rom a.104.1.1 18960 1f25A 402 1.42e-24 1rom a.104.1.1 18952 1f24A 402 1.83e-24 1rom a.104.1.1 18953 1f26A 402 2.91e-24 1rom a.104.1.1 18951 1io8A 368 2.05e-23 1f4tA a.104.1.1 62618 1lfkA 398 2.10e-23 a.104.1.1 77926 1io7A 368 2.19e-23 1f4tA a.104.1.1 18971 1izoA 417 5.81e-23 a.104.1.1 83851 1ue8A 367 5.37e-20 1t85A 414 6.26e-19 1qmqA 414 9.45e-19 1phd a.104.1.1 18907 1p2yA 420 1.00e-18 a.104.1.1 -1443 1j51A 414 1.03e-18 a.104.1.1 66393 1lwlA 417 1.03e-18 a.104.1.1 78273 1phb 414 1.03e-18 1phd a.104.1.1 18906 1gekA 415 1.05e-18 1phd a.104.1.1 18915 1c8jA 414 1.17e-18 1phd a.104.1.1 59085 1iwjA 415 1.21e-18 a.104.1.1 71489 1dz4A 414 1.24e-18 1phd a.104.1.1 18903 1iwkA 415 2.92e-18 a.104.1.1 71490 6cp4 414 3.72e-18 1phd a.104.1.1 18924 2cp4 414 7.06e-18 1phd a.104.1.1 18933 1gebA 415 1.60e-17 1phd a.104.1.1 18932 1n40A 396 1.06e-15 a.104.1.1 79977 1gz3A 554 1.22e-01 c.2.1.7 83393 c.58.1.3 83394 1gz4A 551 2.04e-01 c.2.1.7 70794 c.58.1.3 70795 1pj3A 564 2.13e-01 c.2.1.7 -5974 c.58.1.3 -6380 1qr6A 584 2.26e-01 1qr6A c.2.1.7 30293 c.58.1.3 33941 1nylA 539 6.95e-01 b.53.1.2 80741 c.26.1.1 80742 1qrsA 553 7.93e-01 1gtrA b.53.1.2 26941 c.26.1.1 31580 1qrtA 553 8.47e-01 1gtrA b.53.1.2 26943 c.26.1.1 31582 1qtqA 553 8.63e-01 1gtrA b.53.1.2 26940 c.26.1.1 31579 1euyA 548 8.75e-01 1gtrA b.53.1.2 26945 c.26.1.1 31584 1o0cA 554 8.76e-01 b.53.1.2 86529 c.26.1.1 86530 1gq2A 555 8.91e-01 c.2.1.7 70308 c.58.1.3 70309 1o1zA 234 1.09e+00 c.1.18.3 86555 1qruA 553 1.15e+00 1gtrA b.53.1.2 26946 c.26.1.1 31585 1k8qA 377 1.46e+00 c.69.1.6 72177 1i6vA 314 1.52e+00 d.74.3.1 61852 d.181.1.1 61853 1l9uA 314 1.75e+00 i.8.1.1 73748 1fs9A 507 2.12e+00 1qdbA a.138.1.3 19693 1fs7A 485 2.97e+00 1qdbA a.138.1.3 19691 1cpb 306 3.83e+00 1aye c.56.5.1 33826 1s3eA 520 4.45e+00 c.3.1.2 -6022 d.16.1.5 -9242 1gph1 465 4.76e+00 1ecfB 1ao0A 459 5.04e+00 1ecfB c.61.1.1 34049 d.153.1.1 41816 1h32A 261 8.02e+00 a.3.1.8 76618 a.3.1.8 76619 1q50A 561 8.57e+00 1ndyA 356 8.63e+00 c.1.9.1 -5420 1a0eA 443 8.96e+00 1a0cA c.1.15.3 29537 1ixrC 312 9.24e+00 a.4.5.11 76930 c.37.1.20 76931 1krmA 356 9.28e+00 c.1.9.1 77513 1q0sA 259 9.34e+00 c.66.1.28 -8110 1t10A 605 9.81e+00 1uf2K 506 9.88e+00 1pg4A 652 1.05e+01 e.23.1.1 88067 1nnvA 110 1.11e+01 unknown_sccs -9309 1ixsB 318 1.14e+01 a.4.5.11 76933 c.37.1.20 76934 1hqmA 313 1.15e+01 i.8.1.1 45972 1gr0A 367 1.19e+01 c.2.1.3 70379 d.81.1.3 70380 1h2tC 723 1.24e+01 unknown_sccs 76580 unknown_sccs 76581 unknown_sccs 76582 1hqcA 324 1.32e+01 1hqcA a.4.5.11 16127 c.37.1.20 32424 1gvfA 286 1.45e+01 c.1.10.2 70599 1kyzA 365 1.51e+01 a.4.5.29 73312 c.66.1.12 73313 1q7eA 428 1.54e+01 c.123.1.1 -8768 1g62A 224 1.56e+01 1g61A d.126.1.1 41128 1oizA 278 1.65e+01 a.5.3.1 -362 c.13.1.1 -6217 1mdbA 539 1.67e+01 e.23.1.1 79008 1iw7A 315 1.70e+01 d.74.3.1 71470 d.181.1.1 71471 1jbaA 204 1.85e+01 1rec a.39.1.5 17330 1ldjA 760 1.89e+01 a.4.5.34 73847 a.118.17.1 73848 e.40.1.1 73849 1kskA 234 1.95e+01 unknown_sccs -10150 d.66.1.5 72920 1cjyA 749 1.99e+01 1rlw b.7.1.1 23178 c.19.1.2 34986 1itzA 675 2.02e+01 c.36.1.6 76798 c.36.1.10 76797 c.48.1.1 76799 1sr9A 644 2.05e+01 1o5wA 534 2.06e+01 c.3.1.2 -6025 d.16.1.5 -9245 1h9mA 145 2.10e+01 1h9jA b.40.6.2 60833 b.40.6.2 60834 1eikA 77 2.13e+01 1eikA d.78.1.1 39751 1e5rA 290 2.16e+01 1e5rA b.82.2.4 59276 1g0hA 252 2.21e+01 1dk4A e.7.1.1 60171 1inf 390 2.31e+01 2qwc b.68.1.1 27602 1rvgA 305 2.32e+01 c.1.10.2 -5500 1fcqA 350 2.37e+01 c.1.8.9 65006 1jf0A 195 2.39e+01 1ej3A a.39.1.5 62926 1o5xA 248 2.39e+01 c.1.1.1 -5157 1gnlA 544 2.42e+01 e.26.1.1 70287 1gytA 503 2.44e+01 c.56.5.3 70766 c.50.1.1 70765 1iruF 263 2.45e+01 d.153.1.4 71357 1yrgA 385 2.59e+01 1yrgA c.10.1.2 30854 1f59A 442 2.63e+01 1qgrA a.118.1.1 19123 1hvf 319 2.66e+01 1avc a.65.1.1 18155 1fkw 349 2.68e+01 1a4mA c.1.9.1 29019 1hve 319 2.68e+01 1avc a.65.1.1 18156 1k5dC 386 2.73e+01 c.10.1.2 68170 1fw8A 416 2.76e+01 16pk c.86.1.1 60058 1b9vA 390 2.79e+01 2qwc b.68.1.1 27603 1oxzA 186 2.82e+01 a.7.8.1 87542 1vcjA 389 2.84e+01 b.68.1.1 -4568 1jd3A 164 2.84e+01 1fw9A d.190.1.1 62896 1hvd 319 2.88e+01 1avc a.65.1.1 18154 1uikA 418 2.90e+01 3gwxA 271 2.92e+01 2prgA a.123.1.1 19325 1anxA 319 2.93e+01 1avc a.65.1.1 18161 1avhA 320 2.96e+01 1avc a.65.1.1 18159 1ll1 628 2.98e+01 1lla a.85.1.1 18488 a.86.1.1 18499 b.1.18.3 21864 1oxy 628 2.98e+01 1lla a.85.1.1 18486 a.86.1.1 18497 b.1.18.3 21862 1osnA 341 2.99e+01 c.37.1.1 87387 1lla 628 3.04e+01 1lla a.85.1.1 18485 a.86.1.1 18496 b.1.18.3 21861 1j3bA 529 3.05e+01 c.91.1.1 77071 c.109.1.1 77072 1g4mA 393 3.13e+01 b.1.18.11 65143 b.1.18.11 65144 1b1cA 181 3.15e+01 1amoA c.23.5.2 31212 1fkx 349 3.25e+01 1a4mA c.1.9.1 29018 1mhyD 521 3.46e+01 1mhyD a.25.1.2 16780 1vywB 265 3.49e+01 1doqA 69 3.52e+01 1coo a.60.3.1 17968 2ada 352 3.53e+01 1a4mA c.1.9.1 29027 1mo0A 275 3.56e+01 c.1.1.1 79329 1a4mA 349 3.58e+01 1a4mA c.1.9.1 29014 1uijA 416 3.62e+01 1p85L 127 3.63e+01 i.1.1.1 87881 1lrzA 426 3.73e+01 a.2.7.4 78167 d.108.1.4 78168 d.108.1.4 78169 1cg3A 431 3.74e+01 1adeA c.37.1.10 32219 1uio 349 3.91e+01 1a4mA c.1.9.1 29021 1yaaA 412 3.96e+01 1ajsA c.67.1.1 34280 1oeqA 418 3.99e+01