# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dbxA 158 8.99e-18 1dbuA d.116.1.1 40928 1vjfA 180 5.03e-13 d.116.1.1 -10941 1vkiA 181 1.77e-12 1l7mA 211 1.44e+00 c.108.1.4 73664 1j97A 211 1.82e+00 1f5sA c.108.1.4 62753 1rxyA 253 2.04e+00 c.56.2.1 -7834 1v84A 253 2.07e+00 1j0fA 100 2.12e+00 unknown_sccs -7483 1t1vA 93 2.20e+00 1lx7A 253 4.68e+00 c.56.2.1 74329 1j0aA 325 4.93e+00 c.79.1.1 83871 1pamA 686 5.73e+00 1cxlA b.1.18.2 21846 b.3.1.1 22515 b.71.1.1 27753 c.1.8.1 28740 1hu4A 288 7.53e+00 1hu4A 1nmeA 146 7.53e+00 c.17.1.1 85874 1n5dA 288 7.56e+00 c.2.1.2 80030 1fw9A 164 8.35e+00 1fw9A d.190.1.1 60059 1howA 373 9.02e+00 1hcl d.144.1.7 41679 1m26A 133 9.31e+00 1ng4A 390 9.89e+00 c.3.1.2 85666 d.16.1.3 85667 1ugxA 133 1.01e+01 3tgl 269 1.22e+01 3tgl c.69.1.17 34733 1h2rL 534 1.23e+01 1h2rL e.18.1.1 43298 1d3cA 686 1.27e+01 1cxlA b.1.18.2 21827 b.3.1.1 22496 b.71.1.1 27734 c.1.8.1 28721 1vicA 262 1.33e+01 c.68.1.13 -8252 1vj0A 380 1.52e+01 b.35.1.2 -3697 c.2.1.1 -5721 1q1gA 276 1.53e+01 c.56.2.1 -7846 1hgxA 183 1.55e+01 1tc1A c.61.1.1 34027 1rwyA 109 1.61e+01 a.39.1.4 -825 1oacA 727 1.62e+01 1oacA b.30.2.1 24390 d.17.2.1 38007 d.17.2.1 38008 d.82.1.1 40003 1nq6A 302 1.66e+01 c.1.8.3 -5332 1epxA 370 1.68e+01 1fbaA c.1.10.1 29150 1whi 122 1.75e+01 1whi b.39.1.1 24810 1nzjA 298 1.83e+01 c.26.1.1 -6600 1ryjA 70 1.84e+01 d.15.3.2 -9179 1b25A 619 1.87e+01 1b25A a.110.1.1 19044 d.152.1.1 41796 1bt0A 76 1.88e+01 1ubi d.15.1.1 37607 1dkuA 317 1.94e+01 1dkuA c.61.1.2 34118 c.61.1.2 34119 1f4qA 165 1.94e+01 1alvA a.39.1.8 17360 1ub0A 258 2.05e+01 c.72.1.2 88394 1mvoA 136 2.11e+01 c.23.1.1 79513 1i8aA 189 2.36e+01 1i82A b.1.9.2 61951 1nrjA 158 2.41e+01 d.110.4.4 86124 1iloA 77 2.47e+01 c.47.1.1 66205 1ubi 76 2.48e+01 1ubi d.15.1.1 37584 1ogwA 76 2.53e+01 d.15.1.1 87001 1q44A 326 2.55e+01 c.37.1.5 -7037 1ubkL 534 2.61e+01 e.18.1.1 88422 1dabA 539 2.64e+01 1dabA b.80.1.7 28049 5pal 109 2.72e+01 1a75A a.39.1.4 17215 1fuxA 166 2.73e+01 1fjjA b.17.1.2 60034 1m7bA 184 2.73e+01 c.37.1.8 74572 1vj1A 363 2.74e+01 b.35.1.2 -3728 c.2.1.1 -5752 1jhfA 202 2.89e+01 a.4.5.2 63057 b.87.1.1 63058 1or7A 194 2.94e+01 a.4.13.2 87332 a.177.1.1 87333 1dqnA 230 2.99e+01 1dqnA c.61.1.1 34067 1qbjA 81 3.03e+01 1qbjA a.4.5.19 16155 1q1aA 289 3.05e+01 c.31.1.5 -6781 1evlA 401 3.10e+01 1qf6A c.51.1.1 33202 d.104.1.1 40751 1nddA 76 3.37e+01 1ubi d.15.1.1 37599 1pguA 615 3.47e+01 b.69.4.1 88069 b.69.4.1 88070 1qyaA 307 3.48e+01 1puoA 170 3.51e+01 a.101.1.1 -1318 a.101.1.1 -1322 1m1fA 110 3.55e+01 b.34.6.2 78401 1kw3B 292 3.66e+01 d.32.1.3 77549 d.32.1.3 77550 1h75A 81 3.72e+01 1h75A c.47.1.1 60716 1n97A 389 3.73e+01 a.104.1.1 80335 1qtnA 164 3.74e+01 1pauA c.17.1.1 30999 1p9oA 313 3.74e+01 unknown_sccs -8423 1aky 221 3.74e+01 1zin c.37.1.1 31896 g.41.2.1 45197 1vhwA 253 3.74e+01 c.56.2.1 -7765 1mb3A 124 3.75e+01 c.23.1.1 78907 1o4vA 183 3.79e+01 c.23.8.1 86628 1gkpA 458 3.92e+01 b.92.1.3 70231 c.1.9.6 70232