CreatePredAlphaCost pred_alpha2k alpha11 T0263.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0263.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 10 near_backbone 5 way_back 5 dry5 10 dry6.5 20 dry8 15 dry12 10 \
	phobic_fit 2 \
	sidechain 1 \
	bystroff 5 \
	soft_clashes 10  backbone_clashes 2 \
	break 20  \
	pred_alpha2k 3 \
	pred_alpha04 3 \
	constraints 10 \
	hbond_geom 1 \
	hbond_geom_backbone 1 \
	hbond_geom_beta 5 \
	hbond_geom_beta_pair 10

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file
#	maybe_ssbond 0.5

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	sheet constraints, ssbonds, hbonds, or just arbitrary pairs of atoms.

#from  T0263.t04.dssp-ehl2.constraints
HelixConstraint 	G16	N31	0.6339
HelixConstraint 	E59	N75	0.8062

StrandConstraint	L4	F9	0.6147
StrandConstraint	L37	E43	0.6113
StrandConstraint	A50	F56	0.6195
StrandConstraint	V81	D87	0.7319


# from try8-opt2.sheets -- long sheets need big weights
SheetConstraint A2 F11	T57 H48	hbond T3	15
SheetConstraint T3 F9	N89 A83	hbond L4	15
SheetConstraint H8 N12	A83 E79	hbond A10	15
SheetConstraint G35 E43	T57 E49	hbond L37	15

 
Constraint E90.CA T3.CA 	    5.136    7.136    9.136   1.8
Constraint E90.CA F56.CA	    8.819   10.819   12.819   1.8
Constraint E90.CA F36.CA	   13.516   15.516   17.516   1.8

Constraint P91.CA T3.CA 	    8.379   10.379   12.379   1.8
Constraint P91.CA F56.CA	   12.344   14.344   16.344   1.8
Constraint P91.CA F36.CA	   17.045   19.045   21.045   1.8
 				                  
Constraint L92.CA T3.CA 	   11.224   13.224   15.224   1.8
Constraint L92.CA F56.CA	   14.403   16.403   18.403   1.8
Constraint L92.CA F36.CA	   18.748   20.748   22.748   1.8
 				                  
Constraint S93.CA T3.CA 	   12.596   14.596   16.596   1.8
Constraint S93.CA F56.CA	   14.826   16.826   18.826   1.8
Constraint S93.CA F36.CA	   18.668   20.668   22.668   1.8
 				                  
Constraint Q94.CA T3.CA 	   16.116   18.116   20.116   1.8
Constraint Q94.CA F56.CA	   17.903   19.903   21.903   1.8
Constraint Q94.CA F36.CA	   21.363   23.363   25.363   1.8
 				                  
Constraint I95.CA T3.CA 	   17.453   19.453   21.453   1.8
Constraint I95.CA F56.CA	   18.276   20.276   22.276   1.8
Constraint I95.CA F36.CA	   21.059   23.059   25.059   1.8
 

Constraint I95.CA H8.CA 	   23.320   25.320   27.320   1.8
Constraint I95.CA E67.CA	   32.694   34.694   36.694   1.8
 				                  
Constraint Q94.CA H8.CA 	   22.322   24.322   26.322   1.8
Constraint Q94.CA E67.CA	   31.922   33.922   35.922   1.8
 				                  
Constraint S93.CA H8.CA 	   20.407   22.407   24.407   1.8
Constraint S93.CA E67.CA	   28.612   30.612   32.612   1.8
 				                  
Constraint L92.CA H8.CA 	   20.770   22.770   24.770   1.8
Constraint L92.CA E67.CA	   27.428   29.428   31.428   1.8
 				                  
Constraint P91.CA H8.CA 	   19.362   21.362   23.362   1.8
Constraint P91.CA E67.CA	   24.368   26.368   28.368   1.8