CreatePredAlphaCost pred_alpha2k alpha11 T0263.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0263.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 10 near_backbone 5 way_back 5 dry5 15 dry6.5 20 dry8 10 dry12 5 \
	phobic_fit 2 \
	sidechain 1 \
	bystroff 5 \
	soft_clashes 10  backbone_clashes 2 \
	break 20  \
	pred_alpha2k 2 \
	pred_alpha04 5 \
	constraints 10 \
	hbond_geom 1 \
	hbond_geom_backbone 1 \
	hbond_geom_beta 5 \
	hbond_geom_beta_pair 10

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file
#	maybe_ssbond 0.5

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	sheet constraints, ssbonds, hbonds, or just arbitrary pairs of atoms.

include T0263.t2k.dssp-ehl2.constraints
include T0263.t2k.dssp-ebghstl.constraints
include T0263.t2k.stride-ebghtl.constraints
include T0263.t2k.str2.constraints
include T0263.t2k.alpha.constraints
include T0263.t2k.bys.constraints

include T0263.t04.dssp-ehl2.constraints
include T0263.t04.dssp-ebghstl.constraints
include T0263.t04.stride-ebghtl.constraints
include T0263.t04.str2.constraints
include T0263.t04.alpha.constraints
include T0263.t04.bys.constraints

#from dimer1.sheets
SheetConstraint A2 F11    	T57 H48   	hbond T3	10
SheetConstraint T3 F9     	N89 A83   	hbond L4	10
SheetConstraint H8 N12    	A83 E79   	hbond A10	10
SheetConstraint G35 E43   	T57 E49   	hbond L37	10

SheetConstraint A103 F112	T158 H149	hbond T104	10
SheetConstraint T104 F110	N190 A184	hbond L105	10
SheetConstraint H109 N113	A184 E180	hbond A111	10
SheetConstraint G136 E144	T158 E150	hbond L138	10

# make sheet constraints to connect the two ends
SheetConstraint L37 T42		A202 N197	hbond V40	10
SheetConstraint L138 T143	A101 N96	hbond V141	10