# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1iujA 106 4.06e-02 unknown_sccs -9953 1lq9A 112 4.19e-02 d.58.4.3 78129 1sek 378 1.56e+00 1sek e.1.1.1 42675 1kczA 413 2.01e+00 c.1.11.2 68451 d.54.1.1 68452 1edt 271 2.17e+00 2ebn c.1.8.5 28993 1g7vA 284 2.30e+00 1d9eA c.1.10.4 60335 1tu1A 148 2.42e+00 1qysA 106 2.62e+00 unknown_sccs -13432 1tidB 119 3.09e+00 1d9eA 284 3.46e+00 1d9eA c.1.10.4 29195 1bob 320 5.41e+00 1bob d.108.1.1 40816 1cbg 490 5.67e+00 1e70M c.1.8.4 28933 1j0wA 103 5.72e+00 b.55.1.2 -4364 1ur3M 319 6.00e+00 c.1.7.1 -5248 1n69A 81 6.58e+00 a.64.1.3 80118 1cnt2 187 6.96e+00 1cnt3 1twdA 256 7.09e+00 1shdA 107 7.16e+00 1fmk d.93.1.1 40440 1o60A 292 7.24e+00 c.1.10.4 -5549 1ccwB 483 7.29e+00 1cb7B c.1.19.2 29646 1s1hM 132 7.44e+00 1k8kE 178 7.80e+00 a.148.1.1 68311 1ta3B 303 7.89e+00 1cb7B 483 7.97e+00 1cb7B c.1.19.2 29648 1c0dA 358 8.30e+00 1eceA c.1.8.3 28815 1v02A 565 8.41e+00 1fjcA 96 8.58e+00 1fjcA d.58.7.1 39212 1oef 24 8.90e+00 j.39.1.1 46299 1q15A 503 9.34e+00 c.26.2.1 -6625 d.153.1.1 -11400 1f2fA 104 9.72e+00 1fmk d.93.1.1 40455 1dtdA 303 1.03e+01 1aye c.56.5.1 33823 1uu1A 335 1.08e+01 c.67.1.1 -8146 1hdmA 201 1.10e+01 1iakA b.1.1.2 21583 d.19.1.1 38157 1shaA 104 1.15e+01 1fmk d.93.1.1 40424 1wduA 245 1.16e+01 1cnt1 187 1.24e+01 1cnt3 1o4rA 108 1.24e+01 d.93.1.1 -10624 1l2lA 457 1.28e+01 c.72.1.3 77656 1og6A 298 1.28e+01 c.1.7.1 86984 1vkhA 273 1.37e+01 1jmuB 666 1.39e+01 1v84A 253 1.39e+01 1a4iB 301 1.40e+01 1a4iA c.2.1.7 30279 c.58.1.2 33927 1a4iA 301 1.40e+01 1a4iA c.2.1.7 30278 c.58.1.2 33926 1q53A 112 1.52e+01 d.58.4.4 -9944 1whsA 255 1.52e+01 1ivyA c.69.1.5 34649 1gr2A 279 1.53e+01 1gr2A c.94.1.1 35825 1diaA 306 1.57e+01 1a4iA c.2.1.7 30280 c.58.1.2 33928 1n16A 381 1.62e+01 a.83.1.1 79781 d.128.1.2 79782 1pvdA 537 1.62e+01 1zpdA c.31.1.3 31737 c.36.1.5 31777 c.36.1.9 31778 1ftkA 279 1.68e+01 1gr2A c.94.1.1 35819 1k3eA 156 1.79e+01 d.198.1.1 68103 1jjoC 261 1.88e+01 1cqwA 295 1.91e+01 1b6g c.69.1.8 34679 1bn7A 294 1.93e+01 1bn6A c.69.1.8 34677 1bcsA 263 1.95e+01 1ivyA c.69.1.5 34647 1oe0A 230 2.08e+01 c.37.1.1 -6976 1atiB 505 2.08e+01 1atiA c.51.1.1 33197 d.104.1.1 40746 1qb0A 211 2.09e+01 1c25 c.46.1.1 32699 1bc5A 269 2.12e+01 1af7 a.58.1.1 17929 c.66.1.8 34204 1lvmA 229 2.16e+01 b.47.1.3 78243 1s48A 609 2.17e+01 e.8.1.4 -11955 1hg2A 289 2.17e+01 1hg5A unknown_sccs -401 unknown_sccs -1630 1hg5A 289 2.19e+01 1hg5A unknown_sccs -400 unknown_sccs -1629 1h4vB 421 2.23e+01 1adjA c.51.1.1 60624 d.104.1.1 60625 1aye 401 2.31e+01 1aye c.56.5.1 33824 d.58.3.1 39065 1mqiA 263 2.33e+01 c.94.1.1 -8681 1q45A 391 2.35e+01 c.1.4.1 -5199 1atiA 505 2.36e+01 1atiA c.51.1.1 33196 d.104.1.1 40745 1e44B 96 2.36e+01 1e44B b.101.1.1 59220 1mqdA 261 2.42e+01 c.94.1.1 85049 1v58A 241 2.43e+01 1m5dA 263 2.45e+01 c.94.1.1 78641 1m5eA 263 2.45e+01 c.94.1.1 78642 1bag 425 2.47e+01 1bag b.71.1.1 27720 c.1.8.1 28707 1h9dB 134 2.48e+01 2jhbA b.54.1.1 60822 1af7 274 2.56e+01 1af7 a.58.1.1 17928 c.66.1.8 34203 1h2xA 710 2.58e+01 b.69.7.1 76598 c.69.1.4 76599 1shbA 104 2.60e+01 1fmk d.93.1.1 40425 1qfmA 710 2.62e+01 1qfmA b.69.7.1 27673 c.69.1.4 34641 1h2wA 710 2.63e+01 b.69.7.1 76596 c.69.1.4 76597 1lst 239 2.64e+01 1lst c.94.1.1 35755 1e8nA 710 2.65e+01 1qfmA b.69.7.1 27675 c.69.1.4 34643 1cnt3 187 2.66e+01 1cnt3 1igd 61 2.66e+01 2igd d.15.7.1 37822 2igd 61 2.66e+01 2igd d.15.7.1 37821 1e50B 134 2.69e+01 2jhbA b.54.1.1 59245 1q77A 138 2.75e+01 c.26.2.4 -6639 1di0A 158 2.82e+01 1di0A c.16.1.1 30957 1whtA 256 2.84e+01 1ivyA c.69.1.5 34646 1hf8A 289 2.87e+01 1hg5A unknown_sccs -399 unknown_sccs -1628 8dfr 189 2.90e+01 1aoeA c.71.1.1 34895 1axdA 209 2.93e+01 1gnwA a.45.1.1 17730 c.47.1.5 33024 1pgx 83 2.95e+01 2igd d.15.7.1 37823 1ujpA 271 2.97e+01 c.1.2.4 -5177 1j90A 230 2.98e+01 c.37.1.1 66448 1uehA 253 3.07e+01 c.101.1.1 -6879 1prtA 234 3.08e+01 1bcpA d.166.1.1 42253 2jhbA 143 3.20e+01 2jhbA b.54.1.1 26950 1oktA 211 3.29e+01 a.45.1.1 -942 c.47.1.5 -7467 1f6fA 199 3.30e+01 1f6fA a.26.1.1 16839 1eny 268 3.38e+01 1eny c.2.1.2 29910 1u6bA 98 3.43e+01 1pydA 556 3.49e+01 1zpdA c.31.1.3 31735 c.36.1.5 31773 c.36.1.9 31774 1dyr 206 3.50e+01 1aoeA c.71.1.1 34916 1qk9A 92 3.51e+01 1qk9A d.10.1.3 37485 1jbaA 204 3.51e+01 1rec a.39.1.5 17330 1oatA 439 3.58e+01 2dkb c.67.1.4 34461 1ptoA 244 3.62e+01 1bcpA d.166.1.1 42257 1f4kA 122 3.64e+01 1bm9A a.4.5.7 59646 1zid 268 3.66e+01 1eny c.2.1.2 29911 1eceA 358 3.66e+01 1eceA c.1.8.3 28813 2oatA 439 3.67e+01 2dkb c.67.1.4 34452 1h1nA 305 3.68e+01 c.1.8.3 70855 1auz 116 3.80e+01 1auz c.13.2.1 30883 1fewA 184 3.83e+01 1fewA a.7.4.1 16334 1h09A 338 3.89e+01 b.109.1.1 83420 c.1.8.8 83421 1ua4A 455 3.91e+01 c.72.1.3 -8416 1jdqA 98 3.91e+01 d.68.3.3 66559 1bn6A 294 3.98e+01 1bn6A c.69.1.8 34678 1iibA 106 4.00e+01 1iibA c.44.2.1 32648