# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1iujA 106 4.30e-02 unknown_sccs -9953 1lq9A 112 6.43e-02 d.58.4.3 78129 1sek 378 1.05e-01 1sek e.1.1.1 42675 1edt 271 5.73e-01 2ebn c.1.8.5 28993 1v02A 565 8.99e-01 1ta3B 303 1.50e+00 1tidB 119 1.73e+00 1cbg 490 1.90e+00 1e70M c.1.8.4 28933 1d9eA 284 2.07e+00 1d9eA c.1.10.4 29195 1kczA 413 2.11e+00 c.1.11.2 68451 d.54.1.1 68452 1zid 268 2.34e+00 1eny c.2.1.2 29911 1bc5A 269 2.36e+00 1af7 a.58.1.1 17929 c.66.1.8 34204 1af7 274 2.44e+00 1af7 a.58.1.1 17928 c.66.1.8 34203 1ur3M 319 2.64e+00 c.1.7.1 -5248 1eny 268 3.15e+00 1eny c.2.1.2 29910 1oef 24 3.27e+00 j.39.1.1 46299 2scuB 388 4.53e+00 2scuB c.23.4.1 31141 d.142.1.4 41562 1pvdA 537 4.67e+00 1zpdA c.31.1.3 31737 c.36.1.5 31777 c.36.1.9 31778 1bag 425 4.98e+00 1bag b.71.1.1 27720 c.1.8.1 28707 1qysA 106 5.15e+00 unknown_sccs -13432 1tu1A 148 5.61e+00 1qqtA 551 5.81e+00 1qqtA a.27.1.1 16923 c.26.1.1 31590 g.41.1.1 45175 1g7vA 284 5.83e+00 1d9eA c.1.10.4 60335 1iibA 106 6.57e+00 1iibA c.44.2.1 32648 1q15A 503 6.88e+00 c.26.2.1 -6625 d.153.1.1 -11400 1o60A 292 7.19e+00 c.1.10.4 -5549 1oatA 439 7.25e+00 2dkb c.67.1.4 34461 1shdA 107 7.56e+00 1fmk d.93.1.1 40440 1floA 422 7.59e+00 1floA a.60.9.1 18106 d.163.1.1 42166 1f2fA 104 8.35e+00 1fmk d.93.1.1 40455 1pfvA 551 8.71e+00 a.27.1.1 -727 c.26.1.1 -6603 g.41.1.1 -12765 2oatA 439 8.74e+00 2dkb c.67.1.4 34452 1og6A 298 8.82e+00 c.1.7.1 86984 1s48A 609 9.40e+00 e.8.1.4 -11955 1n2zA 245 9.68e+00 c.92.2.2 79865 1f4lA 551 9.74e+00 1qqtA a.27.1.1 59648 c.26.1.1 59649 g.41.1.1 59650 1bob 320 9.96e+00 1bob d.108.1.1 40816 1jbaA 204 1.01e+01 1rec a.39.1.5 17330 1t5bA 201 1.02e+01 1lst 239 1.08e+01 1lst c.94.1.1 35755 1b4eA 323 1.13e+01 1b4kA c.1.10.3 29186 1twdA 256 1.26e+01 1ash 150 1.29e+01 1ash a.1.1.2 15622 1k8kE 178 1.32e+01 a.148.1.1 68311 1e44B 96 1.34e+01 1e44B b.101.1.1 59220 1di0A 158 1.37e+01 1di0A c.16.1.1 30957 1h5qA 265 1.38e+01 1cydA c.2.1.2 60643 1l8nA 679 1.40e+01 c.1.8.10 84564 d.92.2.2 84565 1i8jA 323 1.42e+01 1b4kA c.1.10.3 61968 1lvmA 229 1.44e+01 b.47.1.3 78243 1shaA 104 1.45e+01 1fmk d.93.1.1 40424 1shbA 104 1.45e+01 1fmk d.93.1.1 40425 1u6bA 98 1.48e+01 1qg3A 195 1.49e+01 1qg3A b.1.2.1 21993 b.1.2.1 21994 1wduA 245 1.50e+01 1py5A 326 1.51e+01 1k9dA 679 1.56e+01 c.1.8.10 77292 d.92.2.2 77293 1o4rA 108 1.59e+01 d.93.1.1 -10624 1l6sA 323 1.66e+01 c.1.10.3 73627 1cnt2 187 1.70e+01 1cnt3 1vhsA 175 1.74e+01 d.108.1.1 -10794 1jjoC 261 1.74e+01 1qb0A 211 1.75e+01 1c25 c.46.1.1 32699 1a4iA 301 1.77e+01 1a4iA c.2.1.7 30278 c.58.1.2 33926 1lzlA 323 1.81e+01 c.69.1.2 78306 1a4iB 301 1.91e+01 1a4iA c.2.1.7 30279 c.58.1.2 33927 1gr2A 279 1.94e+01 1gr2A c.94.1.1 35825 1o4vA 183 1.95e+01 c.23.8.1 86628 1rfmA 344 1.97e+01 c.122.1.1 -8032 1chmA 401 2.01e+01 1chmA c.55.2.1 33545 d.127.1.1 41142 1ftkA 279 2.04e+01 1gr2A c.94.1.1 35819 1q4rA 112 2.08e+01 d.58.4.4 -9943 1cnt1 187 2.12e+01 1cnt3 1n69A 81 2.17e+01 a.64.1.3 80118 1s1hM 132 2.20e+01 1atiB 505 2.21e+01 1atiA c.51.1.1 33197 d.104.1.1 40746 1atiA 505 2.27e+01 1atiA c.51.1.1 33196 d.104.1.1 40745 1j5yA 187 2.30e+01 a.4.5.1 71592 d.94.2.1 71593 1diaA 306 2.35e+01 1a4iA c.2.1.7 30280 c.58.1.2 33928 1j0wA 103 2.36e+01 b.55.1.2 -4364 1jae 471 2.40e+01 1smd b.71.1.1 27773 c.1.8.1 28760 1khbA 625 2.41e+01 c.91.1.1 68606 c.109.1.1 68607 1rypB 250 2.43e+01 1rypB d.153.1.4 41933 1q45A 391 2.50e+01 c.1.4.1 -5199 1vjzA 341 2.54e+01 c.1.8.3 -5318 1cnt3 187 2.64e+01 1cnt3 1uehA 253 2.70e+01 c.101.1.1 -6879 1fewA 184 2.72e+01 1fewA a.7.4.1 16334 1nwaA 203 2.76e+01 d.58.28.1 86295 1dtdA 303 2.78e+01 1aye c.56.5.1 33823 1q77A 138 2.83e+01 c.26.2.4 -6639 1axdA 209 2.86e+01 1gnwA a.45.1.1 17730 c.47.1.5 33024 1pydA 556 2.87e+01 1zpdA c.31.1.3 31735 c.36.1.5 31773 c.36.1.9 31774 1dyr 206 2.91e+01 1aoeA c.71.1.1 34916 1g60A 260 2.94e+01 c.66.1.11 70151 1hh7A 114 2.98e+01 1ycc a.3.1.1 15896 1i8oA 114 2.98e+01 1ycc a.3.1.1 61979 1tca 317 3.01e+01 1tca c.69.1.17 34726 1egaA 301 3.03e+01 1egaA c.37.1.8 32150 d.52.3.1 38836 1k3eA 156 3.04e+01 d.198.1.1 68103 1auz 116 3.06e+01 1auz c.13.2.1 30883 2cevA 299 3.06e+01 1d3vA c.42.1.1 32576 1h2wA 710 3.10e+01 b.69.7.1 76596 c.69.1.4 76597 1qfmA 710 3.10e+01 1qfmA b.69.7.1 27673 c.69.1.4 34641 1e8nA 710 3.11e+01 1qfmA b.69.7.1 27675 c.69.1.4 34643 1h2xA 710 3.12e+01 b.69.7.1 76598 c.69.1.4 76599 1oaoA 674 3.13e+01 e.26.1.2 86744 1qb4A 883 3.14e+01 c.1.12.3 74640 1hg5A 289 3.16e+01 1hg5A unknown_sccs -400 unknown_sccs -1629 1fiy 883 3.21e+01 1fiy c.1.12.3 29307 1st9A 143 3.21e+01 c.47.1.10 -7503 1mqiA 263 3.23e+01 c.94.1.1 -8681 1e55A 512 3.24e+01 1e70M c.1.8.4 28934 1jqnA 883 3.26e+01 c.1.12.3 77159 3bdpA 580 3.27e+01 1xwl c.55.3.5 33711 e.8.1.1 43004 1n81A 186 3.28e+01 a.185.1.1 85388 1mqdA 261 3.31e+01 c.94.1.1 85049 1m5dA 263 3.31e+01 c.94.1.1 78641 1m5eA 263 3.35e+01 c.94.1.1 78642 1iy8A 267 3.36e+01 c.2.1.2 83774 1lbu 213 3.38e+01 1lbu a.20.1.1 16416 d.65.1.1 39549 1h49A 512 3.40e+01 c.1.8.4 83477 1oz9A 150 3.40e+01 unknown_sccs -10588 1jmkC 230 3.41e+01 c.69.1.22 71747 1l2lA 457 3.45e+01 c.72.1.3 77656 1eg7A 557 3.57e+01 1eg7A c.37.1.10 32241 1oe0A 230 3.58e+01 c.37.1.1 -6976 1r30A 369 3.59e+01 unknown_sccs -5683 1s6cA 183 3.59e+01 a.39.1.5 -858 1ho1A 242 3.60e+01 1ho1A c.1.24.1 61097 1jsxA 207 3.61e+01 c.66.1.20 71846 1igd 61 3.65e+01 2igd d.15.7.1 37822 2igd 61 3.65e+01 2igd d.15.7.1 37821 1hmcB 148 3.67e+01 1hmcB a.26.1.2 16868 1ez0A 510 3.68e+01 1eyyA c.82.1.1 35385 1bcfA 158 3.72e+01 1bcfA a.25.1.1 16648 1d3gA 367 3.75e+01 1d3gA c.1.4.1 28600 1bn6A 294 3.79e+01 1bn6A c.69.1.8 34678 8dfr 189 3.79e+01 1aoeA c.71.1.1 34895 1hf8A 289 3.88e+01 1hg5A unknown_sccs -399 unknown_sccs -1628 1f6fA 199 3.93e+01 1f6fA a.26.1.1 16839 1g8kA 825 3.93e+01 1g8jA b.52.2.2 26920 c.81.1.1 35328 1e50B 134 3.95e+01 2jhbA b.54.1.1 59245 1hg2A 289 3.99e+01 1hg5A unknown_sccs -401 unknown_sccs -1630