# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lq9A 112 3.42e-01 d.58.4.3 78129 1iujA 106 6.05e-01 unknown_sccs -9953 1edt 271 6.44e-01 2ebn c.1.8.5 28993 1qysA 106 2.64e+00 unknown_sccs -13432 1cnt1 187 4.19e+00 1cnt3 1h4vB 421 5.49e+00 1adjA c.51.1.1 60624 d.104.1.1 60625 1a88A 275 5.72e+00 1brt c.69.1.12 34707 1shdA 107 5.77e+00 1fmk d.93.1.1 40440 1h5qA 265 6.18e+00 1cydA c.2.1.2 60643 1twiA 434 7.13e+00 1adjA 421 7.47e+00 1adjA c.51.1.1 33188 d.104.1.1 40737 1ccwB 483 7.66e+00 1cb7B c.1.19.2 29646 1b74A 254 7.80e+00 1b74A c.78.2.1 35264 c.78.2.1 35265 1o4rA 108 8.36e+00 d.93.1.1 -10624 1twdA 256 9.76e+00 1sb8A 352 9.80e+00 1h09A 338 1.12e+01 b.109.1.1 83420 c.1.8.8 83421 1v02A 565 1.14e+01 1b5tA 275 1.22e+01 1b5tA c.1.23.1 29676 1e44B 96 1.23e+01 1e44B b.101.1.1 59220 1v58A 241 1.32e+01 1fpzA 212 1.33e+01 1fpzA c.45.1.1 59976 1wduA 245 1.35e+01 1aa6 715 1.42e+01 2napA b.52.2.2 26916 c.81.1.1 35324 1v84A 253 1.42e+01 1ufyA 122 1.45e+01 d.79.1.2 88489 1jjiA 311 1.46e+01 c.69.1.2 66766 1shuX 182 1.47e+01 c.62.1.1 -7982 1exbA 332 1.51e+01 1qrqA c.1.7.1 28666 1q77A 138 1.52e+01 c.26.2.4 -6639 1l6sA 323 1.57e+01 c.1.10.3 73627 1s1hM 132 1.63e+01 1i8jA 323 1.65e+01 1b4kA c.1.10.3 61968 1ur3M 319 1.69e+01 c.1.7.1 -5248 1m1nA 491 1.71e+01 c.92.2.3 78417 1gy8A 397 1.72e+01 c.2.1.2 83376 1shbA 104 1.74e+01 1fmk d.93.1.1 40425 1p3jA 217 1.84e+01 c.37.1.1 -6996 g.41.2.1 -12769 1rpxA 230 1.88e+01 1rpxA c.1.2.2 28536 1rliA 184 2.02e+01 unknown_sccs -6438 1tu1A 148 2.03e+01 1nv8A 284 2.03e+01 c.66.1.30 86224 1q45A 391 2.10e+01 c.1.4.1 -5199 1m1nB 522 2.18e+01 c.92.2.3 78418 1bag 425 2.19e+01 1bag b.71.1.1 27720 c.1.8.1 28707 1psrA 100 2.28e+01 1psrA a.39.1.2 17180 1ta3B 303 2.34e+01 1eg7A 557 2.38e+01 1eg7A c.37.1.10 32241 1vid 221 2.56e+01 1vid c.66.1.1 34178 1pvdA 537 2.58e+01 1zpdA c.31.1.3 31737 c.36.1.5 31777 c.36.1.9 31778 1elqA 390 2.75e+01 1elqA c.67.1.3 34436 1eluA 390 2.76e+01 1elqA c.67.1.3 34434 1qh8B 519 2.85e+01 1qguB c.92.2.3 35634 1zin 217 2.90e+01 1zin c.37.1.1 31915 g.41.2.1 45178 1h1nA 305 2.96e+01 c.1.8.3 70855 1gveA 327 3.00e+01 c.1.7.1 70597 1h4pA 408 3.00e+01 c.1.8.3 -5314 1d3gA 367 3.12e+01 1d3gA c.1.4.1 28600 1sfsA 240 3.18e+01 c.1.8.8 -5407 2igd 61 3.24e+01 2igd d.15.7.1 37821 1nhkL 144 3.25e+01 1npk d.58.6.1 39142 1vhsA 175 3.49e+01 d.108.1.1 -10794 1bcpA 235 3.50e+01 1bcpA d.166.1.1 42255 1cei 94 3.59e+01 1cei a.28.2.1 16939 1whtA 256 3.61e+01 1ivyA c.69.1.5 34646 1mwqA 101 3.61e+01 unknown_sccs -9962 1vhoA 346 3.63e+01 unknown_sccs -4283 c.56.5.4 -7893 1mr8A 93 3.72e+01 1b4cA a.39.1.2 17186 2cb5A 453 3.74e+01 3gcb d.3.1.1 37035 1lt8A 406 3.74e+01 c.1.26.1 78186 1krhA 338 3.89e+01 b.43.4.2 72891 c.25.1.2 72892 d.15.4.2 72893 1jmtA 104 3.93e+01 d.58.7.3 63180