# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lq9A 112 1.61e-01 d.58.4.3 78129 1edt 271 2.37e-01 2ebn c.1.8.5 28993 1iujA 106 5.44e-01 unknown_sccs -9953 1v02A 565 7.57e-01 1qysA 106 2.75e+00 unknown_sccs -13432 1n2zA 245 3.38e+00 c.92.2.2 79865 1shuX 182 3.56e+00 c.62.1.1 -7982 1shdA 107 4.04e+00 1fmk d.93.1.1 40440 1ta3B 303 4.35e+00 1cnt1 187 4.94e+00 1cnt3 1o4rA 108 5.54e+00 d.93.1.1 -10624 1shbA 104 7.13e+00 1fmk d.93.1.1 40425 1fiy 883 7.93e+00 1fiy c.1.12.3 29307 1ur3M 319 8.16e+00 c.1.7.1 -5248 1sb8A 352 8.32e+00 1sek 378 8.87e+00 1sek e.1.1.1 42675 1e44B 96 9.16e+00 1e44B b.101.1.1 59220 1jqnA 883 9.72e+00 c.1.12.3 77159 1s1hM 132 1.03e+01 1e55A 512 1.05e+01 1e70M c.1.8.4 28934 1bag 425 1.10e+01 1bag b.71.1.1 27720 c.1.8.1 28707 1twdA 256 1.17e+01 1h49A 512 1.20e+01 c.1.8.4 83477 1iqrA 420 1.29e+01 a.99.1.1 66275 c.28.1.1 66276 1b5tA 275 1.32e+01 1b5tA c.1.23.1 29676 1vid 221 1.34e+01 1vid c.66.1.1 34178 1l8nA 679 1.34e+01 c.1.8.10 84564 d.92.2.2 84565 1khbA 625 1.36e+01 c.91.1.1 68606 c.109.1.1 68607 1rthA 560 1.48e+01 1rthA c.55.3.1 33576 e.8.1.2 43028 1nu0A 138 1.50e+01 unknown_sccs -7658 1j9yA 385 1.51e+01 1j9yA c.1.8.3 62791 1tidB 119 1.69e+01 1lzlA 323 1.69e+01 c.69.1.2 78306 1uumA 372 1.70e+01 c.1.4.1 -5193 1iibA 106 1.72e+01 1iibA c.44.2.1 32648 1q77A 138 1.74e+01 c.26.2.4 -6639 1a88A 275 1.83e+01 1brt c.69.1.12 34707 1nu7D 282 1.83e+01 unknown_sccs -433 unknown_sccs -434 1rpxA 230 1.88e+01 1rpxA c.1.2.2 28536 1h4vB 421 2.01e+01 1adjA c.51.1.1 60624 d.104.1.1 60625 1g0cA 364 2.02e+01 7a3hA c.1.8.3 60165 1ccwB 483 2.03e+01 1cb7B c.1.19.2 29646 1af7 274 2.17e+01 1af7 a.58.1.1 17928 c.66.1.8 34203 1twiA 434 2.18e+01 1l6sA 323 2.19e+01 c.1.10.3 73627 1i8jA 323 2.24e+01 1b4kA c.1.10.3 61968 1m7xA 617 2.24e+01 b.1.18.2 78749 b.71.1.1 78750 c.1.8.1 78751 1oatA 439 2.27e+01 2dkb c.67.1.4 34461 1vjzA 341 2.39e+01 c.1.8.3 -5318 1lst 239 2.39e+01 1lst c.94.1.1 35755 1h5qA 265 2.40e+01 1cydA c.2.1.2 60643 1odzA 386 2.46e+01 c.1.8.3 86889 1h09A 338 2.46e+01 b.109.1.1 83420 c.1.8.8 83421 1ho1A 242 2.46e+01 1ho1A c.1.24.1 61097 1ufyA 122 2.53e+01 d.79.1.2 88489 1ez0A 510 2.60e+01 1eyyA c.82.1.1 35385 1h1dA 221 2.63e+01 c.66.1.1 83452 1bcpA 235 2.64e+01 1bcpA d.166.1.1 42255 1exbA 332 2.65e+01 1qrqA c.1.7.1 28666 1gy8A 397 2.69e+01 c.2.1.2 83376 2oatA 439 2.71e+01 2dkb c.67.1.4 34452 1jj2V 154 2.78e+01 1ffkT d.59.1.1 63107 1s72W 154 2.78e+01 2igd 61 2.80e+01 2igd d.15.7.1 37821 1hx6A 394 2.82e+01 1cjdA b.121.2.1 58995 b.121.2.1 58996 1te2A 226 2.90e+01 1u6bA 98 2.91e+01 1nhkL 144 2.93e+01 1npk d.58.6.1 39142 1v93A 296 3.06e+01 c.1.23.1 -5654 1oaoA 674 3.13e+01 e.26.1.2 86744 1d3gA 367 3.16e+01 1d3gA c.1.4.1 28600 1m5wA 243 3.17e+01 c.1.24.1 84836 1q4rA 112 3.18e+01 d.58.4.4 -9943 1tu1A 148 3.20e+01 1pvdA 537 3.22e+01 1zpdA c.31.1.3 31737 c.36.1.5 31777 c.36.1.9 31778 1b74A 254 3.24e+01 1b74A c.78.2.1 35264 c.78.2.1 35265 1mr8A 93 3.25e+01 1b4cA a.39.1.2 17186 1h4pA 408 3.31e+01 c.1.8.3 -5314 1vhsA 175 3.31e+01 d.108.1.1 -10794 1v3hA 495 3.39e+01 1wduA 245 3.43e+01 1lvmA 229 3.45e+01 b.47.1.3 78243 1o4vA 183 3.50e+01 c.23.8.1 86628 1v4vA 376 3.51e+01 c.87.1.3 -8583 2cb5A 453 3.61e+01 3gcb d.3.1.1 37035 2myr 501 3.69e+01 1oktA 211 3.73e+01 a.45.1.1 -942 c.47.1.5 -7467 1g24A 211 3.75e+01 1g24A d.166.1.1 42270 1vrtA 560 3.75e+01 1rthA c.55.3.1 33574 e.8.1.2 43023 1t6cA 315 3.76e+01 1byb 495 3.77e+01 1byb c.1.8.1 28790 1q45A 391 3.77e+01 c.1.4.1 -5199 1adjA 421 3.77e+01 1adjA c.51.1.1 33188 d.104.1.1 40737 1uuqA 440 3.79e+01 c.1.8.3 -5321 1q6cA 495 3.95e+01 c.1.8.1 -5300 1elqA 390 3.97e+01 1elqA c.67.1.3 34436 1eluA 390 3.97e+01 1elqA c.67.1.3 34434