PFRMAT RR
TARGET T0263
AUTHOR 4204-4258-2837
REMARK From group SAM-TO4-hand under the direction of
REMARK Kevin Karplus.
REMARK Project by George Shackelford and Kevin Karplus
REMARK The value given is an approximation of the probability
REMARK as provided by the neural network.
REMARK The predictions are limited to a score >= .18 which
REMARK is an approximation of the probability.
REMARK
METHOD The predictor is an artificial neural network
METHOD using 280 inputs.
METHOD Input includes separation and sequence length, corrected
METHOD mutual information between columns (M. Cline) and 
METHOD an e-value measure of correlation between columns (K Karplus) 
METHOD NN: NN280-240n300.net.28
METHOD Other inputs are from alignments and
METHOD secondary predictions from SAM-t2k and SAM-t04 of 
METHOD University of California, Santa Cruz
MODEL 1
MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEA
GGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKL
A
1 76 0 8 0.5066
2 76 0 8 0.45135
1 93 0 8 0.3859
30 73 0 8 0.3604
6 50 0 8 0.29495
42 69 0 8 0.27965
7 69 0 8 0.25075
1 92 0 8 0.25075
73 92 0 8 0.238
37 85 0 8 0.238
23 42 0 8 0.22015
7 66 0 8 0.2125
2 73 0 8 0.2091
11 66 0 8 0.1972
76 93 0 8 0.1955
40 66 0 8 0.1938
7 40 0 8 0.1938
22 61 0 8 0.1887
3 72 0 8 0.1887
38 73 0 8 0.1853
END