CreatePredAlphaCost pred_alpha2k alpha11 T0256.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0256.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 10 near_backbone 3 way_back 3 dry5 15 dry6.5 20 dry8 15 dry12 2 \
	phobic_fit 2 \
	sidechain 6 \
	bystroff 5 \
	soft_clashes 20  backbone_clashes 2 \
	break 50  \
	pred_alpha2k 1 \
	pred_alpha04 6 \
	constraints 10 \
	hbond_geom 1 \
	hbond_geom_backbone 1 \
	hbond_geom_beta 5 \
	hbond_geom_beta_pair 10

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file
#	maybe_ssbond 0.5

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	sheet constraints, ssbonds, hbonds, or just arbitrary pairs of atoms.


#from T0256.t04.dssp-ehl2.constraints
StrandConstraint	H5	T9	0.6674
HelixConstraint 	V13	Y23	0.8403
StrandConstraint	C28	S29	0.6017
StrandConstraint	A35	R40	0.681
StrandConstraint	F45	M50	0.652
StrandConstraint	H62	F65	0.7524
HelixConstraint 	E70	E82	0.8853
StrandConstraint	L86	V87	0.6394
StrandConstraint	Y96	E101	0.8049
StrandConstraint	T107	M111	0.73