# TARGET T0256 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0256.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 198 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.040 0.004 0.007 0.011 0.300 0.638 2 G 0.165 0.030 0.008 0.010 0.147 0.641 3 I 0.407 0.011 0.007 0.007 0.122 0.446 4 K 0.628 0.002 0.009 0.003 0.091 0.265 5 H 0.943 0.004 0.002 0.001 0.015 0.037 6 L 0.965 0.002 0.001 0.001 0.009 0.024 7 N 0.969 0.001 0.001 0.001 0.006 0.025 8 L 0.937 0.001 0.001 0.001 0.014 0.046 9 T 0.872 0.005 0.001 0.001 0.030 0.092 10 V 0.567 0.010 0.005 0.002 0.190 0.226 11 A 0.166 0.020 0.006 0.003 0.334 0.471 12 D 0.052 0.012 0.004 0.013 0.309 0.610 13 V 0.001 0.001 0.038 0.878 0.063 0.019 14 V 0.001 0.001 0.010 0.958 0.024 0.007 15 A 0.001 0.001 0.011 0.974 0.012 0.002 16 A 0.001 0.001 0.003 0.983 0.004 0.009 17 R 0.001 0.001 0.001 0.999 0.001 0.001 18 E 0.001 0.001 0.001 0.999 0.001 0.001 19 F 0.001 0.001 0.001 0.999 0.001 0.001 20 L 0.001 0.001 0.001 0.999 0.001 0.001 21 E 0.001 0.001 0.001 0.996 0.003 0.001 22 K 0.001 0.001 0.002 0.986 0.010 0.002 23 Y 0.001 0.001 0.002 0.967 0.019 0.011 24 F 0.001 0.002 0.005 0.832 0.046 0.114 25 G 0.003 0.001 0.001 0.016 0.088 0.891 26 L 0.040 0.002 0.002 0.008 0.113 0.835 27 T 0.447 0.011 0.006 0.009 0.114 0.412 28 C 0.792 0.012 0.009 0.010 0.047 0.129 29 S 0.810 0.005 0.017 0.011 0.053 0.103 30 G 0.753 0.006 0.023 0.015 0.084 0.120 31 T 0.616 0.011 0.016 0.015 0.177 0.165 32 R 0.269 0.015 0.015 0.014 0.522 0.165 33 G 0.065 0.003 0.021 0.015 0.767 0.129 34 N 0.119 0.004 0.022 0.016 0.716 0.123 35 A 0.615 0.013 0.011 0.014 0.240 0.106 36 F 0.872 0.006 0.004 0.010 0.045 0.064 37 A 0.957 0.002 0.002 0.004 0.014 0.020 38 V 0.969 0.002 0.002 0.003 0.012 0.012 39 M 0.946 0.002 0.002 0.004 0.024 0.022 40 R 0.849 0.005 0.003 0.005 0.083 0.055 41 D 0.390 0.011 0.009 0.013 0.443 0.135 42 N 0.082 0.005 0.017 0.028 0.762 0.106 43 D 0.062 0.007 0.032 0.078 0.724 0.097 44 G 0.231 0.013 0.027 0.101 0.460 0.169 45 F 0.613 0.011 0.015 0.078 0.131 0.152 46 I 0.858 0.009 0.008 0.039 0.029 0.056 47 L 0.926 0.004 0.007 0.027 0.013 0.022 48 T 0.930 0.002 0.008 0.027 0.013 0.019 49 L 0.914 0.002 0.008 0.033 0.017 0.026 50 M 0.868 0.004 0.007 0.037 0.034 0.049 51 K 0.700 0.006 0.009 0.044 0.089 0.153 52 G 0.401 0.012 0.014 0.033 0.235 0.305 53 K 0.257 0.027 0.024 0.032 0.330 0.331 54 E 0.093 0.023 0.044 0.035 0.480 0.325 55 V 0.043 0.023 0.065 0.037 0.583 0.249 56 Q 0.025 0.009 0.056 0.033 0.522 0.354 57 Y 0.039 0.013 0.053 0.020 0.606 0.268 58 P 0.048 0.010 0.033 0.010 0.600 0.298 59 K 0.139 0.015 0.021 0.004 0.434 0.387 60 T 0.509 0.008 0.014 0.002 0.245 0.223 61 F 0.842 0.005 0.005 0.001 0.063 0.085 62 H 0.964 0.004 0.001 0.001 0.014 0.017 63 V 0.961 0.001 0.001 0.001 0.011 0.026 64 G 0.961 0.001 0.001 0.001 0.010 0.028 65 F 0.953 0.002 0.001 0.001 0.012 0.033 66 P 0.918 0.005 0.001 0.001 0.023 0.054 67 Q 0.633 0.014 0.004 0.001 0.154 0.194 68 E 0.065 0.012 0.003 0.001 0.341 0.579 69 S 0.018 0.006 0.002 0.005 0.231 0.738 70 E 0.001 0.001 0.032 0.871 0.070 0.025 71 E 0.001 0.001 0.015 0.946 0.027 0.010 72 Q 0.001 0.001 0.019 0.969 0.009 0.002 73 V 0.001 0.001 0.001 0.997 0.001 0.001 74 D 0.001 0.001 0.001 0.998 0.001 0.001 75 K 0.001 0.001 0.001 0.998 0.001 0.001 76 I 0.001 0.001 0.001 0.999 0.001 0.001 77 N 0.001 0.001 0.001 0.999 0.001 0.001 78 Q 0.001 0.001 0.001 0.999 0.001 0.001 79 R 0.001 0.001 0.001 0.997 0.002 0.001 80 L 0.001 0.001 0.001 0.994 0.004 0.001 81 K 0.001 0.001 0.004 0.981 0.011 0.004 82 E 0.001 0.001 0.005 0.954 0.023 0.018 83 D 0.002 0.001 0.005 0.843 0.040 0.110 84 G 0.003 0.001 0.001 0.011 0.055 0.930 85 F 0.061 0.008 0.001 0.004 0.065 0.861 86 L 0.344 0.013 0.002 0.006 0.077 0.559 87 V 0.489 0.031 0.005 0.006 0.081 0.388 88 E 0.402 0.014 0.009 0.004 0.129 0.442 89 P 0.293 0.011 0.015 0.004 0.221 0.455 90 P 0.247 0.020 0.020 0.004 0.349 0.359 91 K 0.190 0.026 0.018 0.002 0.452 0.312 92 H 0.103 0.014 0.022 0.002 0.584 0.275 93 A 0.076 0.006 0.030 0.003 0.545 0.340 94 H 0.348 0.014 0.023 0.004 0.346 0.266 95 A 0.641 0.011 0.009 0.003 0.149 0.187 96 Y 0.868 0.007 0.002 0.001 0.040 0.082 97 T 0.949 0.001 0.001 0.001 0.017 0.031 98 F 0.973 0.001 0.001 0.001 0.009 0.016 99 Y 0.982 0.002 0.001 0.001 0.004 0.012 100 V 0.957 0.002 0.001 0.001 0.014 0.027 101 E 0.916 0.026 0.001 0.001 0.018 0.039 102 A 0.366 0.037 0.003 0.001 0.563 0.031 103 P 0.013 0.001 0.014 0.002 0.960 0.010 104 G 0.008 0.001 0.007 0.001 0.971 0.012 105 G 0.043 0.007 0.006 0.001 0.923 0.020 106 F 0.334 0.017 0.001 0.001 0.182 0.464 107 T 0.813 0.053 0.001 0.001 0.033 0.100 108 I 0.950 0.004 0.001 0.001 0.012 0.033 109 E 0.931 0.003 0.001 0.001 0.011 0.053 110 V 0.850 0.012 0.001 0.002 0.021 0.114 111 M 0.634 0.020 0.002 0.003 0.030 0.312 112 C 0.005 0.001 0.001 0.001 0.011 0.982