# CreatePredAlphaCost pred_alpha2k alpha11 T0253.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0253.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 10 near_backbone 3 way_back 3 dry5 10 dry6.5 20 dry8 10 dry12 5 \
	phobic_fit 2 \
	sidechain 6 \
	bystroff 5 \
	soft_clashes 20  backbone_clashes 2 \
	break 50  \
	pred_alpha04 6 \
	constraints 10 \
	hbond_geom 1 \
	hbond_geom_backbone 1 \
	hbond_geom_beta 5 \
	hbond_geom_beta_pair 15

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file
#	maybe_ssbond 0.5

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	sheet constraints, ssbonds, hbonds, or just arbitrary pairs of atoms.

#from  T0253.t04.dssp-ehl2.constraints
HelixConstraint 	E2	I8	0.7048
HelixConstraint 	P32	F46	0.7674
HelixConstraint 	A63	K71	0.7413
HelixConstraint 	Q131	Q142	0.676
HelixConstraint 	R162	K167	0.6799
HelixConstraint 	L181	E183	0.6245

StrandConstraint	K53	T56	0.7552
StrandConstraint	V76	R80	0.6043
StrandConstraint	Q106	V109	0.7888
StrandConstraint	H119	D124	0.6162
StrandConstraint	I147	I154	0.8086
StrandConstraint	V172	R177	0.6543