# List of top-scoring protein chains for T0253.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1oreA 180 4.55e-23 c.61.1.1 -7947 1p4aA 285 4.60e-23 unknown_sccs -253 c.61.1.1 -7964 1o57A 291 4.62e-23 unknown_sccs -249 c.61.1.1 -7960 1g2qA 187 1.17e-22 c.61.1.1 65117 1l1qA 186 2.56e-19 c.61.1.1 77653 1lh0A 213 1.52e-18 c.61.1.1 73896 1sto 213 2.57e-18 1opr c.61.1.1 34092 1oroA 213 2.84e-18 1opr c.61.1.1 34093 1mzvA 235 1.12e-17 c.61.1.1 -7945 1qb7A 236 2.28e-17 1qb7A c.61.1.1 34087 1ecfA 504 1.46e-12 1ecfB c.61.1.1 34053 d.153.1.1 41820 1ao0A 459 2.07e-12 1ecfB c.61.1.1 34049 d.153.1.1 41816 1gph1 465 2.10e-12 1ecfB 1j7jA 178 5.36e-08 c.61.1.1 84131 1g9tA 182 1.34e-07 c.61.1.1 70166 1hgxA 183 6.48e-07 1tc1A c.61.1.1 34027 1a3c 181 9.35e-07 1a3c c.61.1.1 34095 1d6nA 214 1.06e-06 1qk3A c.61.1.1 34077 1bzyA 217 1.07e-06 1qk3A c.61.1.1 34071 1nulA 152 1.35e-06 1nulA c.61.1.1 34011 1a98A 152 1.66e-06 1nulA c.61.1.1 34021 1a97A 148 1.72e-06 1nulA c.61.1.1 34023 1ufrA 181 2.24e-06 c.61.1.1 -7949 1nonA 179 2.27e-06 1cjbA 231 3.80e-06 1qk3A c.61.1.1 34079 1dkuA 317 1.57e-05 1dkuA c.61.1.2 34118 c.61.1.2 34119 1qk5A 233 2.19e-05 1qk3A c.61.1.1 34035 1dbrA 231 3.19e-05 1qk3A c.61.1.1 34041 1fsgA 233 3.23e-05 1qk3A c.61.1.1 34029 1i5eA 209 9.87e-05 c.61.1.1 71116 1dqpA 230 2.10e-04 1dqnA c.61.1.1 34069 1i13A 221 9.37e-04 c.61.1.1 71098 1o5oA 221 1.21e-03 c.61.1.1 -7954 1p18A 221 1.35e-03 1tc2A 221 1.57e-03 1tc1A c.61.1.1 34085 1tc1A 220 1.58e-03 1tc1A c.61.1.1 34083 1i14A 221 1.66e-03 c.61.1.1 71100 1i0iA 221 1.82e-03 c.61.1.1 71094 1i0lA 221 2.50e-03 c.61.1.1 71096 1nsf 273 3.11e-01 1d2nA c.37.1.20 32429 1d2nA 272 3.27e-01 1d2nA c.37.1.20 32428 1byrA 155 4.77e-01 1byrA d.136.1.1 41450 1gm1A 94 7.78e-01 b.36.1.1 70271 1d5gA 96 8.07e-01 b.36.1.1 70080 1tmy 120 8.62e-01 1dbwA c.23.1.1 31083 1q7xA 108 9.20e-01 b.36.1.1 -3735 1oziA 99 9.37e-01 b.36.1.1 -3736 1quqB 121 1.15e+00 1quqB b.40.4.3 25305 1upfA 224 1.82e+00 1bd3A c.61.1.1 34102 1bd3A 243 1.92e+00 1bd3A c.61.1.1 34098 1fx0A 507 1.97e+00 a.69.1.1 60080 b.49.1.1 60081 c.37.1.11 60082 1r1a1 287 1.99e+00 1aym1 1aj2 282 2.47e+00 1aj2 c.1.21.1 29665 1jkw 323 3.02e+00 1jkw a.74.1.1 18356 a.74.1.1 18357 1kxu 333 3.14e+00 1jkw a.74.1.1 18358 a.74.1.1 18359 1qh8A 478 3.27e+00 1qguA c.92.2.3 35633 1h1lA 481 3.27e+00 c.92.2.3 70851 1i50A 1733 3.75e+00 e.29.1.2 61754 1v03A 565 4.28e+00 1v02A 565 4.43e+00 1v02E 565 4.47e+00 1gv4A 528 4.50e+00 c.3.1.5 70589 c.3.1.5 70590 d.87.1.1 70591 1k7hA 476 6.92e+00 c.76.1.1 72101 1qe3A 489 7.17e+00 2bce c.69.1.1 34630 1m6iA 493 7.36e+00 c.3.1.5 74533 c.3.1.5 74534 d.87.1.1 74535 1pybA 111 7.42e+00 b.40.4.4 -3929 2ck0H 219 7.73e+00 b.1.1.1 -2208 b.1.1.2 -2478 1li5A 461 8.06e+00 a.27.1.1 73912 c.26.1.1 73913 1c7jA 489 8.07e+00 2bce c.69.1.1 34631 1c7iA 489 8.38e+00 1thg c.69.1.1 34632 1pqwA 198 9.01e+00 c.2.1.1 88278 1e1dA 553 9.73e+00 1e1dA e.26.1.1 43363 1g3mA 294 9.93e+00 c.37.1.5 83268 1hy3A 294 9.97e+00 c.37.1.5 71090 1qyiA 384 1.22e+01 unknown_sccs -6836 1lrtA 376 1.25e+01 c.1.5.1 84685 1mvoA 136 1.25e+01 c.23.1.1 79513 1kq3A 376 1.25e+01 e.22.1.2 68790 1fjmA 330 1.27e+01 1auiA d.159.1.3 42082 1mioB 458 1.28e+01 1qguB c.92.2.3 35602 1pvnA 376 1.30e+01 c.1.5.1 88312 1jk7A 323 1.35e+01 1auiA d.159.1.3 63144 1k5jA 124 1.39e+01 b.121.3.1 68201 1eo0A 77 1.40e+01 1eo0A a.48.3.1 17790 1me8A 503 1.46e+01 c.1.5.1 79028 1us5A 314 1.48e+01 c.94.1.1 -8686 1skyB 502 1.51e+01 1skyB a.69.1.1 18313 b.49.1.1 26478 c.37.1.11 32358 1p0hA 318 1.74e+01 d.108.1.1 -10802 1iruJ 205 1.78e+01 d.153.1.4 71361 1psqA 163 1.85e+01 c.47.1.10 88283 1or0A 160 1.90e+01 d.153.1.2 -11415 1jw0A 158 1.96e+01 d.153.1.2 77194 1i2rA 316 1.97e+01 1onrA c.1.10.1 61580 1l9gA 192 2.10e+01 c.18.1.2 84568 1uepA 103 2.11e+01 b.36.1.1 -3750 1p6qA 129 2.11e+01 1e18A 823 2.12e+01 1dmr b.52.2.2 26907 c.81.1.1 35315 1reqB 637 2.14e+01 1reqB c.1.19.1 29621 c.23.6.1 31248 1vk2A 204 2.16e+01 c.18.1.2 -6326 1gk1A 153 2.17e+01 d.153.1.2 65227 1dms 781 2.18e+01 1dmr b.52.2.2 26906 c.81.1.1 35314 1i85C 126 2.19e+01 1ah1 b.1.1.1 61948 1ghdA 171 2.22e+01 d.153.1.2 83288 1g57A 217 2.37e+01 1g57A d.115.1.2 60253 1iezA 217 2.38e+01 d.115.1.2 66129 1i8lC 126 2.40e+01 1ah1 b.1.1.1 61974 1ah1 129 2.42e+01 1ah1 b.1.1.1 20652 1fm2A 169 2.47e+01 1fm2A d.153.1.2 59877 1e61A 823 2.52e+01 1dmr b.52.2.2 26908 c.81.1.1 35316 2cbf 234 2.56e+01 1cbf c.90.1.1 35588 1fb5A 320 2.61e+01 c.78.1.1 -8498 c.78.1.1 -8499 1geqA 248 2.62e+01 2tysA c.1.2.4 28589 1o6dA 163 2.64e+01 c.116.1.3 -6689 1io0A 185 2.79e+01 c.10.1.1 76753 1e7pG 655 2.96e+01 1qlaA a.7.3.1 59359 c.3.1.4 59360 d.168.1.1 59361 1b2pA 119 2.97e+01 1b2pA b.78.1.1 27998 1e7pA 656 2.97e+01 1qlaA a.7.3.1 59347 c.3.1.4 59348 d.168.1.1 59349 2mobA 138 3.01e+01 1ckv d.137.1.1 41453 1cbf 285 3.08e+01 1cbf c.90.1.1 35587 1qvvA 237 3.11e+01 c.23.16.2 -6531 1bdrA 99 3.11e+01 1fmb b.50.1.1 26702 1rw7A 243 3.15e+01 c.23.16.2 -6530 1p5jA 372 3.16e+01 1othA 321 3.17e+01 1othA c.78.1.1 35260 c.78.1.1 35261 1d4cA 572 3.19e+01 1qjdA a.138.1.3 19698 c.3.1.4 30435 d.168.1.1 42318 1cw4A 416 3.25e+01 1iso c.77.1.1 35068 1mtoA 319 3.28e+01 c.89.1.1 79458 1e7pI 254 3.34e+01 1qlaC f.21.2.1 59364 6pfkA 319 3.37e+01 3pfk c.89.1.1 35583 1e7pC 256 3.40e+01 1qlaC f.21.2.1 59352 1bxnA 485 3.41e+01 1burA c.1.14.1 29376 d.58.9.1 39282 2atcB 152 3.43e+01 8atcB d.58.2.1 39062 g.41.7.1 45314 1hqsA 423 3.46e+01 1iso c.77.1.1 61154 1gl9B 1054 3.54e+01 c.37.1.16 65291 c.37.1.16 65292 e.10.1.1 65293 1p1dA 196 3.55e+01 b.36.1.1 -3737 b.36.1.1 -3738 1gkuB 1054 3.56e+01 c.37.1.16 65257 c.37.1.16 65258 e.10.1.1 65259 1ltoA 245 3.59e+01 b.47.1.2 84707 1bdqA 99 3.67e+01 1fmb b.50.1.1 26686 1nv8A 284 3.70e+01 c.66.1.30 86224 1qvzA 237 3.73e+01 c.23.16.2 -6537 1d4dA 572 3.80e+01 1qjdA a.138.1.3 19702 c.3.1.4 30439 d.168.1.1 42322 1o8bA 219 3.84e+01 unknown_sccs 81180 d.58.40.1 81181 1e58A 249 3.85e+01 1qhfA c.60.1.1 59262 1bdlA 99 3.86e+01 1fmb b.50.1.1 26705