# List of top-scoring protein chains for T0253.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ao0A 459 7.49e-24 1ecfB c.61.1.1 34049 d.153.1.1 41816 1gph1 465 7.84e-24 1ecfB 1oreA 180 8.17e-24 c.61.1.1 -7947 1dkuA 317 1.20e-23 1dkuA c.61.1.2 34118 c.61.1.2 34119 1ecfA 504 2.65e-23 1ecfB c.61.1.1 34053 d.153.1.1 41820 1g2qA 187 5.05e-21 c.61.1.1 65117 1d6nA 214 6.61e-21 1qk3A c.61.1.1 34077 1bzyA 217 1.37e-20 1qk3A c.61.1.1 34071 1j7jA 178 1.62e-20 c.61.1.1 84131 1g9tA 182 3.10e-20 c.61.1.1 70166 1l1qA 186 1.22e-19 c.61.1.1 77653 1p4aA 285 1.67e-19 unknown_sccs -253 c.61.1.1 -7964 1o57A 291 1.68e-19 unknown_sccs -249 c.61.1.1 -7960 1cjbA 231 1.06e-18 1qk3A c.61.1.1 34079 1oroA 213 1.68e-18 1opr c.61.1.1 34093 1lh0A 213 1.78e-18 c.61.1.1 73896 1sto 213 2.54e-18 1opr c.61.1.1 34092 1hgxA 183 5.61e-18 1tc1A c.61.1.1 34027 1a3c 181 6.81e-17 1a3c c.61.1.1 34095 1i5eA 209 8.83e-17 c.61.1.1 71116 1dbrA 231 1.06e-16 1qk3A c.61.1.1 34041 1fsgA 233 1.08e-16 1qk3A c.61.1.1 34029 1nonA 179 1.37e-16 1ufrA 181 1.39e-16 c.61.1.1 -7949 1qk5A 233 1.74e-16 1qk3A c.61.1.1 34035 1mzvA 235 1.81e-16 c.61.1.1 -7945 1p18A 221 3.28e-16 1tc2A 221 4.25e-16 1tc1A c.61.1.1 34085 1tc1A 220 4.54e-16 1tc1A c.61.1.1 34083 1i13A 221 6.83e-16 c.61.1.1 71098 1i0lA 221 1.45e-15 c.61.1.1 71096 1i0iA 221 1.46e-15 c.61.1.1 71094 1i14A 221 1.48e-15 c.61.1.1 71100 1qb7A 236 3.01e-15 1qb7A c.61.1.1 34087 1o5oA 221 3.15e-13 c.61.1.1 -7954 1nulA 152 1.21e-12 1nulA c.61.1.1 34011 1a98A 152 1.99e-12 1nulA c.61.1.1 34021 1a97A 148 2.35e-12 1nulA c.61.1.1 34023 1dqpA 230 1.01e-08 1dqnA c.61.1.1 34069 1upfA 224 1.43e-06 1bd3A c.61.1.1 34102 1bd3A 243 1.47e-06 1bd3A c.61.1.1 34098 1nsf 273 7.55e-02 1d2nA c.37.1.20 32429 1d2nA 272 7.99e-02 1d2nA c.37.1.20 32428 1tk9A 188 3.36e-01 1kq3A 376 3.76e-01 e.22.1.2 68790 1nktA 922 7.23e-01 a.162.1.1 85830 a.172.1.1 85831 c.37.1.19 85832 c.37.1.19 85833 1othA 321 8.26e-01 1othA c.78.1.1 35260 c.78.1.1 35261 1fb5A 320 8.37e-01 c.78.1.1 -8498 c.78.1.1 -8499 1quqB 121 9.28e-01 1quqB b.40.4.3 25305 1sxjA 511 9.29e-01 1ihgA 370 9.83e-01 2cpl a.118.8.1 62380 b.62.1.1 62381 1bxoA 323 1.17e+00 2er7E b.50.1.2 26805 1jwnA 146 1.83e+00 a.1.1.2 67394 2eiaA 206 1.93e+00 1eia a.28.3.1 16949 a.73.1.1 18329 1eia 207 1.94e+00 1eia a.28.3.1 16951 a.73.1.1 18331 1jzlA 146 2.05e+00 a.1.1.2 67865 1k7hA 476 2.11e+00 c.76.1.1 72101 1dms 781 2.15e+00 1dmr b.52.2.2 26906 c.81.1.1 35314 3sdhA 146 2.21e+00 3sdhA a.1.1.2 14984 1nxfA 146 2.28e+00 a.1.1.2 -10 1jtgA 263 2.44e+00 e.3.1.1 67266 1ck3A 263 2.51e+00 1btl e.3.1.1 42698 1q7xA 108 2.55e+00 b.36.1.1 -3735 4hbiA 146 2.58e+00 3sdhA a.1.1.2 14990 1jtdA 263 2.63e+00 e.3.1.1 67264 1ermA 263 2.73e+00 1btl e.3.1.1 42690 1fqgA 263 2.76e+00 1btl e.3.1.1 42699 1qysA 106 2.79e+00 unknown_sccs -13432 1jvjA 263 2.81e+00 e.3.1.1 71896 1li9A 263 2.87e+00 e.3.1.1 77969 1m40A 263 2.89e+00 e.3.1.1 74437 1jwzA 263 2.92e+00 e.3.1.1 71922 3hbiA 146 2.92e+00 3sdhA a.1.1.2 14986 7hbiA 146 3.02e+00 3sdhA a.1.1.2 14994 2hbiA 146 3.03e+00 3sdhA a.1.1.2 14998 1pzpA 263 3.04e+00 e.3.1.1 -11759 1li0A 263 3.10e+00 e.3.1.1 77968 1eo1A 124 3.25e+00 1eo1A c.55.5.1 33739 1lhyA 263 3.72e+00 e.3.1.1 77967 1esuA 263 3.82e+00 1btl e.3.1.1 42696 1va4A 279 3.85e+00 1htzA 263 5.27e+00 1btl e.3.1.1 61262 1pf4A 582 5.91e+00 c.37.1.12 88052 f.37.1.1 88053 1gm1A 94 6.24e+00 b.36.1.1 70271 1mojA 182 6.47e+00 a.25.1.1 -669 1e61A 823 6.54e+00 1dmr b.52.2.2 26908 c.81.1.1 35316 1dmr 823 6.55e+00 1dmr b.52.2.2 26904 c.81.1.1 35312 1e18A 823 6.55e+00 1dmr b.52.2.2 26907 c.81.1.1 35315 4dmr 823 6.60e+00 1dmr b.52.2.2 26905 c.81.1.1 35313 1oziA 99 6.96e+00 b.36.1.1 -3736 1d5gA 96 7.28e+00 b.36.1.1 70080 1myr 501 7.49e+00 1e70M c.1.8.4 28925 1db3A 372 7.87e+00 1db3A c.2.1.2 29813 1jwvA 263 8.04e+00 e.3.1.1 71918 1qcwA 410 8.33e+00 1gox c.1.4.1 28622 1kagA 173 8.39e+00 c.37.1.2 72249 1kbjA 412 8.49e+00 c.1.4.1 72280 2ucz 165 9.13e+00 1u9aA d.20.1.1 38330 1ap8 213 9.17e+00 1ap8 d.86.1.1 40151 1e58A 249 9.85e+00 1qhfA c.60.1.1 59262 1nfjA 89 9.94e+00 d.68.6.1 -10285 1ibqA 325 9.96e+00 2er7E b.50.1.2 62229 1o70A 324 1.06e+01 b.118.1.1 81115 b.118.1.1 81116 1d1jA 139 1.06e+01 1pne d.110.1.1 40878 1jogA 146 1.13e+01 a.24.16.2 77142 1augA 215 1.26e+01 1a2zA c.56.4.1 33798 1pvnA 376 1.27e+01 c.1.5.1 88312 1jkw 323 1.35e+01 1jkw a.74.1.1 18356 a.74.1.1 18357 1mgpA 313 1.38e+01 c.119.1.1 79098 1lrtA 376 1.38e+01 c.1.5.1 84685 1qzzA 374 1.40e+01 a.4.5.29 -277 c.66.1.12 -8045 1oc3A 172 1.41e+01 c.47.1.10 -7491 1ltdA 506 1.44e+01 1gox c.1.4.1 28618 d.120.1.1 41086 1o89A 345 1.44e+01 b.35.1.2 -3703 c.2.1.1 -5727 1kbiA 511 1.45e+01 c.1.4.1 72277 d.120.1.1 72278 1lcoA 511 1.46e+01 1gox c.1.4.1 28624 d.120.1.1 41088 1hd2A 161 1.49e+01 c.47.1.10 60962 1lhpA 312 1.50e+01 c.72.1.5 77960 1j9eA 147 1.52e+01 c.23.5.1 62756 1akt 147 1.58e+01 5nul c.23.5.1 31157 1akw 147 1.59e+01 5nul c.23.5.1 31153 1m54A 363 1.60e+01 c.79.1.1 74463 1ee0A 402 1.61e+01 1bi5A c.95.1.2 36007 c.95.1.2 36008 1l3iA 192 1.67e+01 c.66.1.22 77676 1a1vA 476 1.69e+01 1heiA c.37.1.14 32467 c.37.1.14 32468 1jbqA 435 1.71e+01 1oasA c.79.1.1 62850 1i1oA 147 1.76e+01 5nul c.23.5.1 61542 1akr 147 1.78e+01 1rcf c.23.5.1 31152 1j0dA 341 1.80e+01 c.79.1.1 83902 1f4pA 147 1.86e+01 5nul c.23.5.1 59651 1b8gA 429 1.86e+01 1b8gA c.67.1.4 34499 1jj7A 260 1.87e+01 c.37.1.12 63114 1m7yA 435 1.89e+01 c.67.1.4 78761 1bu5A 147 1.94e+01 5nul c.23.5.1 31155 1heiA 451 1.95e+01 1heiA c.37.1.14 32463 c.37.1.14 32464 1j8qA 147 1.98e+01 c.23.5.1 62744 1vj1A 363 2.00e+01 b.35.1.2 -3728 c.2.1.1 -5752 2atcB 152 2.03e+01 8atcB d.58.2.1 39062 g.41.7.1 45314 1j99A 293 2.03e+01 c.37.1.5 71618 1azl 147 2.12e+01 5nul c.23.5.1 31154 1ov4A 293 2.15e+01 c.37.1.5 -7023 1c7fA 147 2.16e+01 5nul c.23.5.1 31163 1jsqA 582 2.18e+01 i.13.1.1 63270 1pjcA 361 2.19e+01 1sayA c.2.1.4 30101 c.23.12.2 31361 1d4dA 572 2.26e+01 1qjdA a.138.1.3 19702 c.3.1.4 30439 d.168.1.1 42322 1d4cA 572 2.28e+01 1qjdA a.138.1.3 19698 c.3.1.4 30435 d.168.1.1 42318 1cu1A 645 2.28e+01 1heiA b.47.1.3 26408 c.37.1.14 32471 c.37.1.14 32472 1j0eA 341 2.30e+01 c.79.1.1 83906 1ewkA 490 2.35e+01 1ewkA c.93.1.1 35712 1f2dA 341 2.45e+01 1f2dA c.79.1.1 35298 1rf8A 213 2.46e+01 d.86.1.1 -10497 1tmy 120 2.49e+01 1dbwA c.23.1.1 31083 1jflA 228 2.51e+01 c.78.2.1 71656 c.78.2.1 71657 1gmxA 108 2.55e+01 c.46.1.3 65355 1ro8A 262 2.55e+01 unknown_sccs -7320 1mzpA 217 2.58e+01 e.24.1.1 79710 1akz 223 2.78e+01 3eugA c.18.1.1 31007 1eo9B 241 2.82e+01 3pchM b.3.6.1 22826 1eu1A 780 2.85e+01 1dmr b.52.2.2 26903 c.81.1.1 35311 1p6qA 129 2.88e+01 1a0tP 413 2.95e+01 1a0tP f.4.3.2 43794 1oh2Q 413 2.96e+01 f.4.3.2 87007 1upaA 573 2.96e+01 c.31.1.3 -6745 c.36.1.5 -6903 c.36.1.9 -6943 1fx1 148 2.98e+01 1rcf c.23.5.1 31169 1akq 147 2.99e+01 5nul c.23.5.1 31159 1sgzA 389 3.09e+01 b.50.1.2 -4301 1riqA 465 3.12e+01 unknown_sccs -1295 d.104.1.1 -10769 1e1dA 553 3.13e+01 1e1dA e.26.1.1 43363 1pdnC 128 3.17e+01 6paxA a.4.1.5 16047 1d4oA 184 3.18e+01 1d4oA c.31.1.4 31748 1q14A 361 3.18e+01 c.31.1.5 -6777 1nj4A 363 3.20e+01 b.105.1.1 80545 e.3.1.1 80546 1kl7A 514 3.26e+01 c.79.1.1 72678 1fknA 391 3.26e+01 1fknA b.50.1.2 26879 1e4mM 501 3.31e+01 1e70M c.1.8.4 59226 1kxu 333 3.34e+01 1jkw a.74.1.1 18358 a.74.1.1 18359 1fw1A 216 3.36e+01 a.45.1.1 60051 c.47.1.5 60052 1og0A 370 3.38e+01 c.1.10.4 -5532 1jbkA 195 3.39e+01 c.37.1.20 71631 1dwaM 499 3.40e+01 1e70M c.1.8.4 28928 1djlA 207 3.42e+01 1d4oA c.31.1.4 31746 1of8A 370 3.42e+01 c.1.10.4 -5508 1n3bA 216 3.49e+01 c.37.1.1 79959 1nzoA 363 3.64e+01 b.105.1.1 -2933 e.3.1.1 -11784 1nh2B 53 3.65e+01 a.32.1.1 -777 1i50A 1733 3.65e+01 e.29.1.2 61754 1km0A 247 3.67e+01 c.1.2.3 72732 1rcjA 265 3.68e+01 e.3.1.1 -11762 1ongA 265 3.76e+01 e.3.1.1 -11761 1us5A 314 3.79e+01 c.94.1.1 -8686 2sspE 223 3.86e+01 3eugA c.18.1.1 31012 1c7jA 489 3.87e+01 2bce c.69.1.1 34631 1qe3A 489 3.92e+01 2bce c.69.1.1 34630 1vhtA 218 3.92e+01 c.37.1.1 -7004 8ohm 435 3.95e+01 1heiA c.37.1.14 32469 c.37.1.14 32470 1f6dA 376 3.97e+01 1f6dA c.87.1.3 35467 1vgvA 384 3.97e+01 c.87.1.3 -8575 1ji0A 240 3.99e+01 c.37.1.12 71665 1jfrA 262 3.99e+01 1jfrA c.69.1.16 34724 1q1aA 289 3.99e+01 c.31.1.5 -6781