# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1g2qA 187 2.52e-13 c.61.1.1 65117 1dkuA 317 1.45e-12 1dkuA c.61.1.2 34118 c.61.1.2 34119 1ecfA 504 2.33e-12 1ecfB c.61.1.1 34053 d.153.1.1 41820 1l1qA 186 3.97e-12 c.61.1.1 77653 1opr 213 1.38e-11 1opr c.61.1.1 34091 1oroA 213 1.60e-11 1opr c.61.1.1 34093 1lh0A 213 2.12e-11 c.61.1.1 73896 1o57A 291 2.99e-11 unknown_sccs -249 c.61.1.1 -7960 1bzyA 217 1.76e-10 1qk3A c.61.1.1 34071 1qb7A 236 4.10e-10 1qb7A c.61.1.1 34087 1cjbA 231 8.26e-10 1qk3A c.61.1.1 34079 1hgxA 183 3.72e-09 1tc1A c.61.1.1 34027 1tc1A 220 3.77e-09 1tc1A c.61.1.1 34083 1a3c 181 4.20e-09 1a3c c.61.1.1 34095 1fsgA 233 4.45e-09 1qk3A c.61.1.1 34029 1o5oA 221 9.97e-08 c.61.1.1 -7954 1nulA 152 3.09e-07 1nulA c.61.1.1 34011 1dqpA 230 2.83e-05 1dqnA c.61.1.1 34069 1dqnA 230 3.06e-05 1dqnA c.61.1.1 34067 1bd3A 243 3.17e-04 1bd3A c.61.1.1 34098 1kq3A 376 2.24e-01 e.22.1.2 68790 1to6A 371 6.24e-01 1nsf 273 9.57e-01 1d2nA c.37.1.20 32429 1d2nA 272 1.03e+00 1d2nA c.37.1.20 32428 1kv8A 216 1.84e+00 c.1.2.3 73054 1q6oA 216 1.84e+00 c.1.2.3 -5162 1f0kA 364 2.13e+00 1f0kA c.87.1.2 35465 1heiA 451 2.67e+00 1heiA c.37.1.14 32463 c.37.1.14 32464 2lbp 346 2.84e+00 2liv c.93.1.1 35709 1mk4A 157 2.93e+00 d.108.1.1 84979 1jeoA 180 2.97e+00 c.80.1.3 66611 1va4A 279 3.12e+00 1usgA 346 3.12e+00 c.93.1.1 -8635 1brt 277 3.36e+00 1brt c.69.1.12 34699 1broA 277 3.78e+00 1brt c.69.1.12 34700 1jq5A 370 3.86e+00 e.22.1.2 67084 1e5dA 402 4.06e+00 1e5dA c.23.5.1 31208 d.157.1.3 42061 1q9iA 571 4.46e+00 a.138.1.3 -2051 c.3.1.4 -6041 d.168.1.1 -11607 1kssA 571 4.60e+00 a.138.1.3 72928 c.3.1.4 72929 d.168.1.1 72930 1l8nA 679 4.69e+00 c.1.8.10 84564 d.92.2.2 84565 1hkhA 279 4.75e+00 c.69.1.12 -8342 1f6dA 376 5.02e+00 1f6dA c.87.1.3 35467 1exmA 405 5.32e+00 1efcA b.43.3.1 25696 b.44.1.1 25736 c.37.1.8 32131 1e39A 571 5.47e+00 1qjdA a.138.1.3 19694 c.3.1.4 30431 d.168.1.1 42314 1lwjA 441 5.69e+00 b.71.1.1 74303 c.1.8.1 74304 1m1nB 522 5.72e+00 c.92.2.3 78418 1uasA 362 5.81e+00 b.71.1.1 88388 c.1.8.1 88389 1ha3A 405 6.25e+00 1efcA b.43.3.1 60869 b.44.1.1 60870 c.37.1.8 60871 1vimA 200 6.40e+00 c.80.1.3 -8532 1ermA 263 6.57e+00 1btl e.3.1.1 42690 1m40A 263 6.67e+00 e.3.1.1 74437 1btl 263 6.73e+00 1btl e.3.1.1 42691 1ko3A 230 6.76e+00 d.157.1.1 -11454 1tmy 120 7.05e+00 1dbwA c.23.1.1 31083 1vjnA 220 7.14e+00 unknown_sccs -11458 1pea 385 7.65e+00 1pea c.93.1.1 35662 1us5A 314 7.95e+00 c.94.1.1 -8686 1l3iA 192 8.07e+00 c.66.1.22 77676 1i60A 278 8.90e+00 c.1.15.4 71118 1garA 212 9.03e+00 2gar c.65.1.1 34162 1quqB 121 9.07e+00 1quqB b.40.4.3 25305 1on3A 523 9.87e+00 c.14.1.4 87107 c.14.1.4 87108 1vj1A 363 9.93e+00 b.35.1.2 -3728 c.2.1.1 -5752 1upaA 573 1.02e+01 c.31.1.3 -6745 c.36.1.5 -6903 c.36.1.9 -6943 2liv 344 1.04e+01 2liv c.93.1.1 35708 2pfkA 320 1.05e+01 3pfk c.89.1.1 35577 1lk5A 229 1.06e+01 unknown_sccs 73960 d.58.40.1 73961 1nfjA 89 1.10e+01 d.68.6.1 -10285 1ewkA 490 1.14e+01 1ewkA c.93.1.1 35712 1ps9A 671 1.15e+01 c.1.4.1 -5206 1bxoA 323 1.15e+01 2er7E b.50.1.2 26805 1cf9A 753 1.24e+01 1cf9A c.23.16.3 31441 e.5.1.1 42815 1iirA 415 1.24e+01 1iirA c.87.1.5 62453 2bvwA 362 1.27e+01 1bvwA c.6.1.1 30666 1oc7A 364 1.27e+01 c.6.1.1 86794 1p80A 753 1.28e+01 c.23.16.3 -6547 e.5.1.1 -11840 1fp2A 352 1.28e+01 1fpxA a.4.5.29 59941 c.66.1.12 59942 1b74A 254 1.30e+01 1b74A c.78.2.1 35264 c.78.2.1 35265 1b25A 619 1.30e+01 1b25A a.110.1.1 19044 d.152.1.1 41796 1jnyA 435 1.37e+01 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 2dri 271 1.43e+01 2dri c.93.1.1 35637 1o97D 320 1.46e+01 c.26.2.3 81233 c.31.1.2 81234 1nbwB 117 1.46e+01 c.51.3.2 80396 1nktA 922 1.47e+01 a.162.1.1 85830 a.172.1.1 85831 c.37.1.19 85832 c.37.1.19 85833 1jv1A 505 1.49e+01 c.68.1.5 71892 1pg5A 299 1.51e+01 1hd2A 161 1.52e+01 c.47.1.10 60962 4pfk 319 1.53e+01 3pfk c.89.1.1 35582 1mo0A 275 1.56e+01 c.1.1.1 79329 1p8xA 344 1.60e+01 d.109.1.1 -10813 d.109.1.1 -10814 d.109.1.1 -10815 1jdpA 441 1.61e+01 c.93.1.1 62906 1gpuA 680 1.61e+01 c.36.1.6 65455 c.36.1.10 65454 c.48.1.1 65456 1rj9A 304 1.61e+01 a.24.13.1 -631 c.37.1.10 -7129 1qopB 396 1.64e+01 2tysB c.79.1.1 35270 1jkxA 212 1.66e+01 c.65.1.1 66813 1cg2A 393 1.66e+01 1cg2A c.56.5.4 33844 d.58.19.1 39360 1dljA 402 1.69e+01 1dliA a.100.1.4 18808 c.2.1.6 30212 c.26.3.1 31621 1el5A 389 1.70e+01 1b3mA c.3.1.2 30369 d.16.1.3 37937 1q7sA 117 1.72e+01 unknown_sccs -7522 1cex 214 1.73e+01 1cex unknown_sccs 31285 1j0hA 588 1.74e+01 b.1.18.2 77027 b.71.1.1 77028 c.1.8.1 77029 1m3sA 186 1.75e+01 c.80.1.3 78573 1o97C 264 1.84e+01 c.26.2.3 81232 1fs5A 266 1.84e+01 unknown_sccs 65044 1lx7A 253 1.86e+01 c.56.2.1 74329 1nu0A 138 1.88e+01 unknown_sccs -7658 1k2yX 463 1.89e+01 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066 1j7xA 302 1.90e+01 c.14.1.2 66425 1iupA 282 1.92e+01 c.69.1.10 76815 1i1qA 520 1.93e+01 1qdlA d.161.1.1 61543 1jflA 228 1.95e+01 c.78.2.1 71656 c.78.2.1 71657 1dmgA 225 1.96e+01 1dmgA c.22.1.1 31036 1o58A 303 1.96e+01 c.79.1.1 -8503 1a8s 273 1.99e+01 1brt c.69.1.12 34710 1ffa 214 1.99e+01 1cex unknown_sccs 31289 1rpjA 288 2.01e+01 2dri c.93.1.1 35656 1gudA 288 2.03e+01 c.93.1.1 83326 1vi6A 208 2.08e+01 c.23.15.1 -6489 1hdoA 206 2.12e+01 1he2A c.2.1.2 60965 1tk9A 188 2.18e+01 1fg7A 356 2.18e+01 1gewA c.67.1.1 59819 1kl7A 514 2.20e+01 c.79.1.1 72678 1b06A 210 2.26e+01 1avmA a.2.11.1 15740 d.44.1.1 38737 2gar 212 2.30e+01 2gar c.65.1.1 34161 1pwhA 327 2.33e+01 c.79.1.1 -8524 1bg6 359 2.38e+01 1bg6 a.100.1.5 18810 c.2.1.6 30214 1qvbA 481 2.44e+01 1qvbA c.1.8.4 28983 1jykA 254 2.47e+01 c.68.1.13 67458 1m3uA 264 2.55e+01 c.1.12.8 84784 1rxyA 253 2.56e+01 c.56.2.1 -7834 1gewA 356 2.58e+01 1gewA c.67.1.1 60470 1hrkA 359 2.62e+01 1hrkA c.92.1.1 61228 1a8q 274 2.62e+01 1brt c.69.1.12 34702 1p1jA 533 2.62e+01 c.2.1.3 87687 d.81.1.3 87688 1q16A 1247 2.64e+01 b.52.2.2 -4337 c.81.1.1 -8547 1owqA 361 2.65e+01 1mqoA 227 2.70e+01 1byb 495 2.72e+01 1byb c.1.8.1 28790 1reqB 637 2.73e+01 1reqB c.1.19.1 29621 c.23.6.1 31248 1g3mA 294 2.74e+01 c.37.1.5 83268 1lfwA 470 2.75e+01 c.56.5.4 77942 d.58.19.1 77943 1uj6A 227 2.76e+01 1tia 279 2.78e+01 3tgl c.69.1.17 34737 1fcjA 322 2.79e+01 1oasA c.79.1.1 35289 1j99A 293 2.81e+01 c.37.1.5 71618 1g5aA 628 2.81e+01 b.71.1.1 65152 c.1.8.1 65153 1gmxA 108 2.82e+01 c.46.1.3 65355 1o2dA 371 2.94e+01 e.22.1.2 86591 1jx4A 352 2.94e+01 unknown_sccs -10188 unknown_sccs -11898 1eonA 245 2.99e+01 1rvaA c.52.1.2 33238 1l7mA 211 3.03e+01 c.108.1.4 73664 1q6cA 495 3.05e+01 c.1.8.1 -5300 1vdeA 454 3.05e+01 1vdeA b.86.1.2 28378 d.95.2.2 40581 d.95.2.2 40582 1v1rA 400 3.05e+01 1b0uA 262 3.06e+01 1b0uA c.37.1.12 32370 1pmmA 466 3.06e+01 c.67.1.6 -8159 1cf2O 337 3.16e+01 1b7gO c.2.1.3 29994 d.81.1.1 39909 1o7eA 276 3.16e+01 e.3.1.1 -11766 1e58A 249 3.16e+01 1qhfA c.60.1.1 59262 1f2vA 219 3.20e+01 1f2vA c.23.17.1 59627 1s1pA 331 3.20e+01 c.1.7.1 -5240 1m2xA 223 3.23e+01 d.157.1.1 84764 1j8fA 323 3.24e+01 1j8fA c.31.1.5 62738 1qv9A 283 3.38e+01 unknown_sccs -6888 1db3A 372 3.38e+01 1db3A c.2.1.2 29813 1kao 167 3.43e+01 1ctqA c.37.1.8 32014 1rpnA 335 3.44e+01 c.2.1.2 -5759 1itxA 419 3.46e+01 c.1.8.5 71425 d.26.3.1 71426 1sx5A 244 3.47e+01 c.52.1.2 -7551 1dc1A 323 3.48e+01 1dc1A c.52.1.11 33321 1j97A 211 3.50e+01 1f5sA c.108.1.4 62753 1nriA 306 3.54e+01 c.80.1.3 86123 2bc2A 227 3.60e+01 1a7tA d.157.1.1 42031 1uu1A 335 3.61e+01 c.67.1.1 -8146 1trkA 680 3.66e+01 1trkA c.36.1.6 31804 c.36.1.10 31803 c.48.1.1 33090 1evlA 401 3.69e+01 1qf6A c.51.1.1 33202 d.104.1.1 40751 1rxxA 421 3.72e+01 unknown_sccs -10982 1h65A 270 3.73e+01 c.37.1.8 65640 1m1nA 491 3.80e+01 c.92.2.3 78417 1qysA 106 3.84e+01 unknown_sccs -13432 1p99A 295 3.88e+01 c.94.1.1 -8697 4pgaA 337 3.90e+01 4pgaA c.88.1.1 35565 1jjeA 222 3.91e+01 1a7tA d.157.1.1 63117 1ur3M 319 3.91e+01 c.1.7.1 -5248 1a5t 334 3.95e+01 1a5t a.80.1.1 18450 c.37.1.20 32423 1scuA 288 3.95e+01 2scuA c.2.1.8 30307 c.23.4.1 31135