Best Alignments for T0248

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1oo0A/T0248-1oo0A-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1oo0A/T0248-1oo0A-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 2.0384e+008.0651e-01 d.232.1.1
1sur/T0248-1sur-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1sur/T0248-1sur-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 8.6813e+001.3153e+00 1sur c.26.2.2
1o86A/T0248-1o86A-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1o86A/T0248-1o86A-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.3099e+011.6042e+01 d.92.1.5
1hl6B/T0248-1hl6B-t2k-global-adpstyle1.a2m 1hl6B/T0248-1hl6B-t2k-global-adpstyle1.al 1.3363e+013.4844e+00 d.232.1.1
1ku2A/T0248-1ku2A-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1ku2A/T0248-1ku2A-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.3613e+011.5656e+00 a.4.13.1
a.177.1.1
1guxA/T0248-1guxA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1guxA/T0248-1guxA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.5927e+011.7327e+00 1guxA a.74.1.3
1l6nA/T0248-1l6nA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1l6nA/T0248-1l6nA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.7526e+012.6878e+00 a.73.1.1
a.61.1.1
1uphA/T0248-1uphA-t2k-local-adpstyle1.a2m 1uphA/T0248-1uphA-t2k-local-adpstyle1.al 1.9577e+011.8309e+01 a.61.1.1
1adwA/1bqk-T0248-fssp-local-adpstyle5.a2m 1adwA/1bqk-T0248-fssp-local-adpstyle5.al 2.1612e+014.1368e+00 1bqk b.6.1.1
1hiwA/T0248-1hiwA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1hiwA/T0248-1hiwA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 3.4000e+012.5291e+01 1hiwA a.61.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001